View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14306_low_3 (Length: 416)
Name: NF14306_low_3
Description: NF14306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14306_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 33472077 - 33472485
Alignment:
| Q |
1 |
acaagggaaactatctctctacggaaccaacctttgttacaagacactattcgccttcaacctctcacggacgtgcaaatcatgtgggattctctcacga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33472077 |
acaagggaaactatctctctacggaaccaacctttgttacaagacactattcgccttcaacctctcacggacgtgcaaatcatgtgggattctctcacga |
33472176 |
T |
|
| Q |
101 |
ttgcccacctgtttgtttaagccaaacacgaaaagctcgaatgagaatctcatctggtatgttttgacgcaaacaaatcaaattttaaatacatcgttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33472177 |
ttgcccacctgtttgtttaagccaaacacgaaaagctcgaatgagaatctcatctggtatgttttgacgcaaacaaatcaaattttaaatacatcgttct |
33472276 |
T |
|
| Q |
201 |
tgccttctgttcgagtggacaaattttatataattaagtgttaaaaatgtttttgttccatataaatatgtctattttagttccactcaaaaatttctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33472277 |
tgccttctgttcgagtggacaaattttatataattaagtgttaaaaatgtttttgttccatataaatatgtctattttagtttcactcaaaaatttctca |
33472376 |
T |
|
| Q |
301 |
gattttagtctcttaaagtttttcatttgaacttttggtcactccttaaagtaaactaataca-nnnnnnnnngaaggataaagtaaactaatacataga |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33472377 |
gattttagtctcttaaagtttttcatttgaacttttggtcactccttaaagtaaactaatacattttttttttgaaggataaagtaaactaatacataga |
33472476 |
T |
|
| Q |
400 |
attcatatt |
408 |
Q |
| |
|
||||||||| |
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|
| T |
33472477 |
attcatatt |
33472485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 13998461 - 13998358
Alignment:
| Q |
7 |
gaaactatctctctacggaaccaacctttgttacaagacactattcgccttcaacctctcacggacgtgcaaatcatgtgggattctctcacgattgccc |
106 |
Q |
| |
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|||||||| ||| || |||||||||||| ||||||||| | |||| ||||||||| | ||||| |||||| ||||||||||| |||||||| |||| | |
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| T |
13998461 |
gaaactatatctgtatggaaccaaccttggttacaagatgttgttcgtcttcaacctttaacggaagtgcaagtcatgtgggatgctctcacggttgctc |
13998362 |
T |
|
| Q |
107 |
acct |
110 |
Q |
| |
|
|||| |
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|
| T |
13998361 |
acct |
13998358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 33306233 - 33306073
Alignment:
| Q |
1 |
acaagggaaactatctctctacggaaccaacctttgttacaagacactattcgccttcaacctctcacggacgtgcaaatcatgtgggattctctcacga |
100 |
Q |
| |
|
||||| |||||||| ||| || |||||||||||| ||||||||| | |||| ||||||||| | ||||| || ||| ||||||||||| |||||||| |
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| T |
33306233 |
acaagtgaaactatatctgtatggaaccaaccttggttacaagatgttgttcgtcttcaacctttaacggaagttcaagtcatgtgggatgctctcacgg |
33306134 |
T |
|
| Q |
101 |
ttgcccacctgtttgtttaagccaaacacgaaaagctcgaatgagaatctcatctggtatgtttt |
165 |
Q |
| |
|
|||| |||| | || |||||||||||||| | |||||||||| ||||| |||||||||| |
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|
| T |
33306133 |
ttgctcacc----ttttcaagccaaacacgaaggaatggaatgagaatttcatccggtatgtttt |
33306073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 35321217 - 35321320
Alignment:
| Q |
7 |
gaaactatctctctacggaaccaacctttgttacaagacactattcgccttcaacctctcacggacgtgcaaatcatgtgggattctctcacgattgccc |
106 |
Q |
| |
|
|||||||| ||| || |||||||||||| ||||||||| | |||| ||||||||| | ||||| || ||| ||||||||||| |||||||| |||| | |
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| T |
35321217 |
gaaactatatctgtatggaaccaaccttggttacaagatgttgttcgtcttcaacctttaacggaagttcaagtcatgtgggatgctctcacggttgctc |
35321316 |
T |
|
| Q |
107 |
acct |
110 |
Q |
| |
|
|||| |
|
|
| T |
35321317 |
acct |
35321320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 30926534 - 30926488
Alignment:
| Q |
226 |
ttatataattaagtgttaaaaatgtttttgttccatataaatatgtc |
272 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||| |||||||||||| |
|
|
| T |
30926534 |
ttatataattaagggttaaatatgtttttggtccctataaatatgtc |
30926488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 19689944 - 19689898
Alignment:
| Q |
232 |
aattaagtgttaaaaatgtttttgttccatataaatatgtctatttt |
278 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||||||| ||||| |
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|
| T |
19689944 |
aattaagggttaaatatgtttttgatccatataaatatgtcaatttt |
19689898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 19700529 - 19700483
Alignment:
| Q |
232 |
aattaagtgttaaaaatgtttttgttccatataaatatgtctatttt |
278 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
19700529 |
aattaagggttaaatatgtttttgatccatataaatatgtcaatttt |
19700483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 3386847 - 3386798
Alignment:
| Q |
229 |
tataattaagtgttaaaaatgtttttgttccatataaatatgtctatttt |
278 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| ||||||||| || ||||| |
|
|
| T |
3386847 |
tataattaagggttaaaaatgtttttggtccctataaatatatcaatttt |
3386798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 41648689 - 41648657
Alignment:
| Q |
240 |
gttaaaaatgtttttgttccatataaatatgtc |
272 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
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|
| T |
41648689 |
gttaaatatgtttttgttccatataaatatgtc |
41648657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 14327596 - 14327640
Alignment:
| Q |
228 |
atataattaagtgttaaaaatgtttttgttccatataaatatgtc |
272 |
Q |
| |
|
|||| |||||| |||||| ||||||||| |||||||||||||||| |
|
|
| T |
14327596 |
atattattaagggttaaatatgtttttgatccatataaatatgtc |
14327640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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