View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14306_low_4 (Length: 398)
Name: NF14306_low_4
Description: NF14306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14306_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 5183668 - 5183798
Alignment:
| Q |
12 |
atgaaatatggtgagaagtagaatcacaacataaataaacacaacaattttagtcannnnnnnccttccttgcaagtaaaaattagaatatggtttcata |
111 |
Q |
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| T |
5183668 |
atgaaatatggtgagaagtagaatcacaacataaataaacacaacaattttagtcatttttttccttccttgcaagtaaaaattagaatatggtttcata |
5183767 |
T |
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| Q |
112 |
tatttatactgaataatgcctacgttttcct |
142 |
Q |
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| T |
5183768 |
tatttatactgaataatgcctacgttttcct |
5183798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 188 - 363
Target Start/End: Original strand, 5183989 - 5184166
Alignment:
| Q |
188 |
aagcaattcaagatatgttttgagannnnnnnnatggcatcaaccacttgtgattgtccctttaacacacttaataaggag-tttgaattaagaaaatct |
286 |
Q |
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|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5183989 |
aagcaattcaagggatgttttgagattttttttatggcatcaactacttgtgattgtccctttaacacacttaataaggagttttgaattaagaaaatct |
5184088 |
T |
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| Q |
287 |
aatcatatgaattcannnnnnnnatccaacattttgttattattttaaca-tttcataagagaagttactctctcctt |
363 |
Q |
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| T |
5184089 |
aatcatatgaattcattttttttatccaacattttgttattattttaacattttcataagagaagttactctctcctt |
5184166 |
T |
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