View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14306_low_6 (Length: 362)
Name: NF14306_low_6
Description: NF14306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14306_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 4215478 - 4215817
Alignment:
| Q |
1 |
aattcattcacttctcatttaaggtaatcaataggtctataaattggattcatatgaagccaatttcattccatgctaaacaaactcaataaagaaaaat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4215478 |
aattcattcacttctcatttaaggaaatcaatagatctataaattggattcatatgaagccaatttcattccatgctaaacaaactcaataaagaaaaat |
4215577 |
T |
|
| Q |
101 |
aaaaatactcattcatacactatggcaaaaatcactgcttcatttgttttggctctctttgttgttgcaattttgaatggttattgtgctgagggtgcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4215578 |
aaaaatactcattcatacactatggcaaaaatcactgcttcatttgttttggctctctttgttgttgcaattttgaatggttattgtgctgagggtgcag |
4215677 |
T |
|
| Q |
201 |
gaacaagaaatcaaccaaagaaagacgatgatatttacaaatctgaaaaaacgttcggttgtttgtttttgtataagatgtgtttgttctttcaaataga |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4215678 |
aaacaagtaatcaaccaaagaaagacgatgatatttacaaatctgaaaaaacgttcggttgtttgtttttgtataagatgtgtttgttctttcaaataga |
4215777 |
T |
|
| Q |
301 |
ttgtcctgattactataagttatgttttccttctactcct |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
4215778 |
ttgtcctgattactataagttatgttttccttctcctcct |
4215817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 4218139 - 4218217
Alignment:
| Q |
118 |
cactatggcaaaaatcactgcttcatttgttttggctctctttgttgttgcaattttgaatggttattgtgctgagggt |
196 |
Q |
| |
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|||||||||||||| || ||||||| ||||||| | |||| |||||||||||||||||||||| ||| ||||||||||| |
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| T |
4218139 |
cactatggcaaaaaccattgcttcaattgttttagttctccttgttgttgcaattttgaatggctatagtgctgagggt |
4218217 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4053852 - 4053899
Alignment:
| Q |
1 |
aattcattcacttctcatttaaggtaatcaataggtctataaattgga |
48 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
4053852 |
aattgattcacttctcatttaaggtaatcaatagtcctataaattgga |
4053899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 34357100 - 34357185
Alignment:
| Q |
118 |
cactatggcaaaaatcactgcttcatttgttttggctctctttgttgttgcaattttgaatggttattgtgctgagggtgcaggaa |
203 |
Q |
| |
|
|||||||||||||| || ||||||| ||||| | | | || | ||||||||||| ||||||| ||| |||||||||||||||||| |
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| T |
34357100 |
cactatggcaaaaaccattgcttcacttgttctagttttcctagttgttgcaatgctgaatggctatggtgctgagggtgcaggaa |
34357185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 5398525 - 5398630
Alignment:
| Q |
102 |
aaaatactcattcatac----actatggcaaaaatcactgcttcatttgttttggctctctttgttgttgcaattttgaatggttattgtgctgagggtg |
197 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||| ||||||||| |||| |||||| || ||||||||||| ||| |||||||||||| |
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|
| T |
5398525 |
aaaatactcattcatacttacactatggcaaaatccactgcttcacttgttttggttctccttgttgcggcgattttgaatggctatagtgctgagggtg |
5398624 |
T |
|
| Q |
198 |
caggaa |
203 |
Q |
| |
|
|||||| |
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|
| T |
5398625 |
caggaa |
5398630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5388877 - 5388922
Alignment:
| Q |
1 |
aattcattcacttctcatttaaggtaatcaataggtctataaattg |
46 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| || |||||||| |
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|
| T |
5388877 |
aattcattcacttctcatttaaggaaatcattagttcgataaattg |
5388922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5398418 - 5398462
Alignment:
| Q |
1 |
aattcattcacttctcatttaaggtaatca-ataggtctataaat |
44 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| ||||||||| |
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|
| T |
5398418 |
aattcattcacttctcatttaaggaaatcatatagttctataaat |
5398462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 54726832 - 54726901
Alignment:
| Q |
96 |
aaaataaaaatactcattcatacactatggcaaaaatcactgcttcatttgttttggctctctttgttgt |
165 |
Q |
| |
|
|||||||||||||| |||| || | ||||||||||| |||||||||||||||| | | | |||||||||| |
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|
| T |
54726832 |
aaaataaaaatactgattcttatattatggcaaaaaccactgcttcatttgttctagttgtctttgttgt |
54726901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11952647 - 11952603
Alignment:
| Q |
1 |
aattcattcacttctcatttaaggtaatcaataggtctataaatt |
45 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| |||||||||| |
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|
| T |
11952647 |
aattcattcacttctcatttaaggaaatcactagttctataaatt |
11952603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 41804391 - 41804466
Alignment:
| Q |
174 |
tgaatggttattgtgctgagggtgcaggaacaagaaatcaaccaaagaaagacgatgatatttacaaatctgaaaa |
249 |
Q |
| |
|
||||||||||| |||||||| || ||||| | | |||| |||||||||||| |||| ||||||||||||| |||| |
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| T |
41804391 |
tgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaa |
41804466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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