View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14307_high_109 (Length: 223)
Name: NF14307_high_109
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_109 |
 | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold0713 (2 HSPs) |
| | |
|
| [»] scaffold0438 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0406 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 2822 - 2614
Alignment:
| Q |
1 |
ccaaatctcaatttcaaccattggcccaacaaatcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
2822 |
ccaaatctcaatttcaaccattggcccaacaaatcatagataaattcaaacagagaacataataatatcgatgactttaaacatgagcatcattgagaag |
2723 |
T |
|
| Q |
101 |
aaaaagttcaaagggtgtgttccccatt--ttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2722 |
aaaaagttcaaagggtgtgttccccattttttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataat |
2623 |
T |
|
| Q |
199 |
gatcgttat |
207 |
Q |
| |
|
||||||||| |
|
|
| T |
2622 |
gatcgttat |
2614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 4272 - 4067
Alignment:
| Q |
1 |
ccaaatctcaatttcaaccattggcccaacaaatcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
4272 |
ccaaatctcaatttcaaccattggcccaacatatcatagataaattcaaacagagaccataataatatcgatgactttaaacatgagcatcattgagaag |
4173 |
T |
|
| Q |
101 |
aaaaagttcaaagggtgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4172 |
aaaaagttcaaagggtgtgttccccat-ttttataaaaactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatga |
4074 |
T |
|
| Q |
201 |
tcgttat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
4073 |
tcgttat |
4067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 136 - 6
Alignment:
| Q |
1 |
ccaaatctcaatttcaaccattggcccaacaaatcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
136 |
ccaaatctcaatttcaaccattggcccaacatatcatagataaattcaaacagagaccataataatatcgatgactttaaacatgagcatcattgagaag |
37 |
T |
|
| Q |
101 |
aaaaagttcaaagggtgtgttccccattttt |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36 |
aaaaagttcaaagggtgtgttccccattttt |
6 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 17654391 - 17654596
Alignment:
| Q |
1 |
ccaaatctcaatttcaaccattggcccaacaaatcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
17654391 |
ccaaatctcaatttcaaccattggcccaacaaatcatagataaattcaaccagagaccataataatatcgatgactttaaacatgagcatcattgagaag |
17654490 |
T |
|
| Q |
101 |
aaaaagttcaaagggtgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17654491 |
aaaaagttcaaagggtgtgttcccca-tttttataaaaactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatga |
17654589 |
T |
|
| Q |
201 |
tcgttat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
17654590 |
tcgttat |
17654596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 34 - 207
Target Start/End: Original strand, 47051586 - 47051759
Alignment:
| Q |
34 |
tcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaa-gttcaaagggtgtgttccccatttttt |
132 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| ||||||||| || ||| |||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
47051586 |
tcatagataaattcaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagggtgtgttccccattttat |
47051685 |
T |
|
| Q |
133 |
ataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttat |
207 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
47051686 |
a-aaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatatgataatgatcgttat |
47051759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 172
Target Start/End: Complemental strand, 16099886 - 16099746
Alignment:
| Q |
34 |
tcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaa---gttcaaagggtgtgttccccatttt |
130 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||||||||| ||||||||| || ||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16099886 |
tcatagataaatccaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaaaatgttcaaagggtgtgttccccatttt |
16099787 |
T |
|
| Q |
131 |
ttataaacactttaacatagaaaattatcaaaatatcaataa |
172 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16099786 |
t-ataaacactttaacatagaaaattatcaaaatatcaataa |
16099746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 29290141 - 29290243
Alignment:
| Q |
101 |
aaaaagttcaaagggtgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatga |
200 |
Q |
| |
|
|||| ||||||| ||||||||||||| ||| ||||| ||||||| ||| ||||| || |||||| |||||||| ||| ||||||| |||||||||| |
|
|
| T |
29290141 |
aaaatgttcaaaaggtgtgttcccca-atttgataaatactttaaaatataaaatcataaaaatagcaataataacgatattgaaaataagcgataatga |
29290239 |
T |
|
| Q |
201 |
tcgt |
204 |
Q |
| |
|
|||| |
|
|
| T |
29290240 |
tcgt |
29290243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 18695185 - 18695394
Alignment:
| Q |
1 |
ccaaatctcaatttcaaccattggcccaacaaatcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||| ||| |
|
|
| T |
18695185 |
ccaaatctcaatttcaaccattggcccaacaaatcatagataaattcaaacagagaccataataatatcgatgactttaaacacgagcatcattgataag |
18695284 |
T |
|
| Q |
101 |
aaaaagttcaaagggtgtgttcccca---ttttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataa |
197 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18695285 |
aaaaagttcaaagggtgtgttccccatttttttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataa |
18695384 |
T |
|
| Q |
198 |
tgatcgttat |
207 |
Q |
| |
|
|||||||||| |
|
|
| T |
18695385 |
tgatcgttat |
18695394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 4764509 - 4764666
Alignment:
| Q |
1 |
ccaaatctcaatttcaaccattggcccaacaaatcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaag |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
4764509 |
ccaaatctcaatttcaaacattggcccaacaaatcatagataaattcaaacagagaccataataatatcgatgactttaaacatgagcatcattgagaag |
4764608 |
T |
|
| Q |
101 |
aaaaagttcaaagggtgtgttcccca-ttttttataaacactttaacatagaaaatta |
157 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4764609 |
aaaaagttcaaagggtgtgttccccatttttttataaacactttaacatagaaaatta |
4764666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 34 - 207
Target Start/End: Original strand, 27562199 - 27562373
Alignment:
| Q |
34 |
tcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaa-gttcaaagggtgtgttccccatttttt |
132 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||||||||| ||||||||| || ||| |||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
27562199 |
tcatagataaatccaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagggcgtgttccccatttttt |
27562298 |
T |
|
| Q |
133 |
ataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
27562299 |
ataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgttat |
27562373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 174
Target Start/End: Original strand, 54352867 - 54353005
Alignment:
| Q |
34 |
tcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaa-gttcaaagggtgtgttccccatttttt |
132 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||||||||| ||||||||| || ||| |||||||||||| ||||||||| |||||||||| ||||| |
|
|
| T |
54352867 |
tcatagataaatccaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagg--gtgttcccca-ttttt |
54352963 |
T |
|
| Q |
133 |
ataaacactttaacatagaaaattatcaaaatatcaataata |
174 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
54352964 |
ataaacactttaacatagaaaatcaccaaaatatcaataata |
54353005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 4764663 - 4764696
Alignment:
| Q |
174 |
attaatagggaaaatatgcgataatgatcgttat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
4764663 |
attaatagggaaaatatgcgataatgatcgttat |
4764696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 6912352 - 6912561
Alignment:
| Q |
1 |
ccaaatctcaatttcaaccattggcccaacaaatcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaag |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
6912352 |
ccaaatctcaatttcaaacattggcccaacaaatcatagataaattcaaacagagaccataataatatcgatgactttaaacatgagcatcattgagaag |
6912451 |
T |
|
| Q |
101 |
aaaaagttcaaagggtgtgttcccca---ttttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataa |
197 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6912452 |
aaaaagttcaaagggtgtgttccccatttttttttataaacactttaacatagaaaattataaaaatatcaataatattaatagggaaaatatgcgataa |
6912551 |
T |
|
| Q |
198 |
tgatcgttat |
207 |
Q |
| |
|
|||||||||| |
|
|
| T |
6912552 |
tgatcgttat |
6912561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 34 - 207
Target Start/End: Complemental strand, 19434126 - 19433953
Alignment:
| Q |
34 |
tcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaa-gttcaaagggtgtgttccccatttttt |
132 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| ||||||||| || ||| |||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
19434126 |
tcatagataaattcaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagggcatgttccccattttt- |
19434028 |
T |
|
| Q |
133 |
ataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttat |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
19434027 |
ataaacactttaagatagaaaattatcaaaatatcaataatattaatagtaaaaatatgtgataatgatcgttat |
19433953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 5706673 - 5706737
Alignment:
| Q |
110 |
aaagggtgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataata |
174 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| || ||||| | |||||||||||||||| |
|
|
| T |
5706673 |
aaagggtgtgttccccattttttataaatactttaacttataaaataaccaaaatatcaataata |
5706737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 9821827 - 9821622
Alignment:
| Q |
1 |
ccaaatctcaatttcaaccattggcccaacaaatcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||| || |
|
|
| T |
9821827 |
ccaaatctcaatttcaaccattggcccaacaaatcatagataaattcaaacaaagaccataataatatcgatgactttaaacatgagcatcattgaggag |
9821728 |
T |
|
| Q |
101 |
aaaaagttcaaagggtgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9821727 |
aaaaagttcaaagggtgtgttccccat-ttttataaacactttaacatataaaattatcaaaatatcaataatattaatagggaaaatatgcgataatga |
9821629 |
T |
|
| Q |
201 |
tcgttat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
9821628 |
tcgttat |
9821622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 25479283 - 25479450
Alignment:
| Q |
1 |
ccaaatctcaatttcaaccattggcccaacaaatcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||| | ||||||||||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
25479283 |
ccaaatctcaatttcaaccattggcccaacaaatcgtagataaattcaaacaaaaaccataataatatcgatgactttaaacatgagcaacattgagaag |
25479382 |
T |
|
| Q |
101 |
aaaaagttcaaagggtgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaa |
169 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25479383 |
aaaaagttcaatgggtgtgttccccattttttataaaca-tttaacatagaaaattatcaaaatatcaa |
25479450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 33062195 - 33062070
Alignment:
| Q |
3 |
aaatctcaatttcaaccattggcccaacaaatcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaagaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
33062195 |
aaatctcaatttcaaccattggcccaacaaatcatagataaattcaaacagagaccataataatatcgatgactttaaacatgagcatcattgagaagaa |
33062096 |
T |
|
| Q |
103 |
aaagttcaaagggtgtgttccccatt |
128 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
33062095 |
aaagttcaaagggtgtgttccccatt |
33062070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 28039759 - 28039683
Alignment:
| Q |
128 |
tttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
28039759 |
tttttataaacactttaacatagaaaat---caaaatatcaataatattaatagtaaaaatatgtgataatgatcgttat |
28039683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 13142955 - 13143047
Alignment:
| Q |
111 |
aagggtgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgt |
204 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||||||| ||||| || ||||||||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
13142955 |
aagggtgtgttccctatttttg-taaatactttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcgataatgatcgt |
13143047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 17354867 - 17354774
Alignment:
| Q |
111 |
aagggtgtgttccccattttttataaacacttt-aacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgt |
204 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||||| ||||| || ||||||||||||||| ||| ||||||| || ||||||||||| |
|
|
| T |
17354867 |
aagggtgtgttccccatttttg-taaatacttttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgt |
17354774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 27683481 - 27683388
Alignment:
| Q |
111 |
aagggtgtgttccccattttttataaacacttt-aacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgt |
204 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||||| ||||| || ||||||||||||||| ||| ||||||| || ||||||||||| |
|
|
| T |
27683481 |
aagggtgtgttccccatttttg-taaatacttttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgt |
27683388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 27690802 - 27690709
Alignment:
| Q |
111 |
aagggtgtgttccccattttttataaacacttt-aacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgt |
204 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||||| ||||| || ||||||||||||||| ||| ||||||| || ||||||||||| |
|
|
| T |
27690802 |
aagggtgtgttccccatttttg-taaatacttttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgt |
27690709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 4707508 - 4707712
Alignment:
| Q |
1 |
ccaaatctcaatttcaaccattggcccaacaaatcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaag |
100 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| |
|
|
| T |
4707508 |
ccaaatctcaatat-aaccattggcccaaccaatcatagataaattcaaacagagaccataataacatcgatgactttaaacatgagcatcattgagaag |
4707606 |
T |
|
| Q |
101 |
aaaaagttcaaagggtgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4707607 |
aaaaagttcaaagggtgtgttcccca-tttttataaacactttaacatagaaaattatcaaagtatcaataatattaatagggaaaatatgcgataatga |
4707705 |
T |
|
| Q |
201 |
tcgttat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
4707706 |
tcgttat |
4707712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 15998700 - 15998632
Alignment:
| Q |
139 |
actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttat |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15998700 |
acttttacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttat |
15998632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 15256708 - 15256673
Alignment:
| Q |
139 |
actttaacatagaaaattatcaaaatatcaataata |
174 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15256708 |
actttaacatataaaattatcaaaatatcaataata |
15256673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 26341503 - 26341603
Alignment:
| Q |
52 |
agagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaagttcaaagggtgtgttccccattttttataaacactttaacataga |
151 |
Q |
| |
|
||||||| ||||| ||| ||||| ||||||||| | ||| ||| ||||||| ||||||||||||||||||| |||| |||||||||||| |||| | |
|
|
| T |
26341503 |
agagaccgtaatagtattgatgactttaaacataaatatcaatgacaagaaaatgttcaaagggtgtgttccc--attttaataaacactttagcataaa |
26341600 |
T |
|
| Q |
152 |
aaa |
154 |
Q |
| |
|
||| |
|
|
| T |
26341601 |
aaa |
26341603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 809745 - 809905
Alignment:
| Q |
48 |
aaacagagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaagttcaaagggtgtgttccccatttt-ttataaacactttaac |
146 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
809745 |
aaacagagaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttccccatttttttataaacactttaac |
809844 |
T |
|
| Q |
147 |
atagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
809845 |
atagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttat |
809905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 207
Target Start/End: Original strand, 15001728 - 15001933
Alignment:
| Q |
4 |
aatctcaatttcaaccattggcccaacaaatcatagatgaattcaaacagagaccataataatatcgatgattttaaa--catgagcatccttgagaaga |
101 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| |||||||| ||| ||||||||||||||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
15001728 |
aatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaaaacatgagcatcattgagaaga |
15001827 |
T |
|
| Q |
102 |
aaaa-gttcaaagggtgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatga |
200 |
Q |
| |
|
|||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
15001828 |
aaaaagctcaaagggtgtgttccccatttt-tataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatga |
15001926 |
T |
|
| Q |
201 |
tcgttat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
15001927 |
tcgttat |
15001933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 34 - 207
Target Start/End: Original strand, 39155700 - 39155874
Alignment:
| Q |
34 |
tcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaa-gttcaaagggtgtgttccccatttttt |
132 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||||||||| ||||||||| || ||| |||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
39155700 |
tcatagataaatccaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagggcgtgttccccatttttt |
39155799 |
T |
|
| Q |
133 |
ataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
39155800 |
ataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgttat |
39155874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 20024512 - 20024568
Alignment:
| Q |
120 |
ttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatatt |
176 |
Q |
| |
|
|||| ||||||| ||||| ||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
20024512 |
ttcctcatttttaataaatactttaacaaagaaaataatcaaaatatcaataatatt |
20024568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 10414937 - 10414835
Alignment:
| Q |
101 |
aaaaagttcaaagggtgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatga |
200 |
Q |
| |
|
|||| ||||||| |||| |||||||| ||| ||||| ||||||||||| ||||| || |||||| |||||||| ||| ||||||| |||||||||| |
|
|
| T |
10414937 |
aaaatgttcaaaaggtgcgttccccaatttg-ataaatactttaacatataaaatcataaaaatagcaataataacgatattgaaaataagcgataatga |
10414839 |
T |
|
| Q |
201 |
tcgt |
204 |
Q |
| |
|
|||| |
|
|
| T |
10414838 |
tcgt |
10414835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 34 - 174
Target Start/End: Original strand, 5520482 - 5520620
Alignment:
| Q |
34 |
tcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaa-gttcaaagggtgtgttccccatttttt |
132 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||||||||| ||||||||| || ||| ||||| |||||| ||||||||| |||||||||| ||||| |
|
|
| T |
5520482 |
tcatagataaatccaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaggaaaaatgttcaaagg--gtgttcccca-ttttt |
5520578 |
T |
|
| Q |
133 |
ataaacactttaacatagaaaattatcaaaatatcaataata |
174 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
5520579 |
ataaacactttaacatacaaaatcaccaaaatatcaataata |
5520620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 204
Target Start/End: Complemental strand, 15597754 - 15597602
Alignment:
| Q |
52 |
agagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaag-ttcaaagggtgtgttccccattttttataaacactttaacatag |
150 |
Q |
| |
|
|||||||||||||||||| |||| | | ||||| || ||| ||||| |||||| ||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
15597754 |
agagaccataataatatcaatgactgttaacataagtatcaatgagaggaaaaatcttcaaagggtgtgttccccattttt-ataaatactttaacatat |
15597656 |
T |
|
| Q |
151 |
aaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgt |
204 |
Q |
| |
|
||||| || ||||||| ||||||| ||| ||||||| | |||||||||||| |
|
|
| T |
15597655 |
aaaatcataaaaatattaataataaagataatgaaaataagtgataatgatcgt |
15597602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 29469387 - 29469551
Alignment:
| Q |
31 |
aaatcatagatgaattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaagttcaaagggtgtgttccccatttt |
130 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||| | ||||| |||||| | || ||| ||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
29469387 |
aaatcatagatgaatccaaatagagaccatattaattttgatgactttaaatgtaagtatcaatgacaagaaaatattgaaagggtgtgttccccatttt |
29469486 |
T |
|
| Q |
131 |
ttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgt |
204 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
29469487 |
-tataaacactttaacatagaaaat--------aatcaataatattaatagtgaagatatgtgataatgatcgt |
29469551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 204
Target Start/End: Complemental strand, 28802697 - 28802545
Alignment:
| Q |
52 |
agagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaa-gttcaaagggtgtgttccccattttttataaacactttaacatag |
150 |
Q |
| |
|
||||||||| |||||||| |||| ||| | ||| || ||| ||||| || ||| |||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28802697 |
agagaccatgataatatcaatgacttttaccataagtatcaatgagaggagaaatgttcaaagagtgtgttccccattttt-ataaacactttaacatat |
28802599 |
T |
|
| Q |
151 |
aaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgt |
204 |
Q |
| |
|
||||| || ||||||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
28802598 |
aaaatcataaaaatatcaataataacgataatgaaaatatgtgataatgatcgt |
28802545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 36265459 - 36265616
Alignment:
| Q |
43 |
aattcaaacagagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaag-ttcaaagggtgtgttccccattttttataaacact |
141 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| |||||||||| |||| || ||||||| ||| || | ||||| |||||||||| |||| ||| |
|
|
| T |
36265459 |
aattcaaatagagaccataataatattaatgactttaaacatg--catcaaagacgagaaaaatattcgaaagatgtgtcccccatttttg-taaatact |
36265555 |
T |
|
| Q |
142 |
ttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatc |
202 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||| ||| |||||||| | |||||||||| |
|
|
| T |
36265556 |
ttaacatataaaatcataaaaatatcaataataacgataaggaaaataagtgataatgatc |
36265616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 8682 - 8753
Alignment:
| Q |
52 |
agagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaagttcaaagggtgtgttcc |
123 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||| | ||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
8682 |
agagaccataatagtattgatgactttaaacataaatatcaatgacaagaaaatgttcaaagggtgtgttcc |
8753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 11664 - 11764
Alignment:
| Q |
52 |
agagaccataataatatcgatgattttaaacatgagcatccttgagaagaaaaagttcaaagggtgtgttccccattttttataaacactttaacataga |
151 |
Q |
| |
|
||||||| ||||| ||| ||||| ||||||||| | ||| ||| ||||||| ||||||||||||||||||| |||| |||||||||||| |||| | |
|
|
| T |
11664 |
agagaccgtaatagtattgatgactttaaacataaatatcaatgacaagaaaatgttcaaagggtgtgttccc--attttaataaacactttagcataaa |
11761 |
T |
|
| Q |
152 |
aaa |
154 |
Q |
| |
|
||| |
|
|
| T |
11762 |
aaa |
11764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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