View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14307_high_17 (Length: 515)
Name: NF14307_high_17
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 25 - 497
Target Start/End: Complemental strand, 21493598 - 21493126
Alignment:
| Q |
25 |
gagattcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatgg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21493598 |
gagattcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatgg |
21493499 |
T |
|
| Q |
125 |
tcttttctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttattat--cacaatttccatgcatgca |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
21493498 |
tcttttctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttagccatactagttattatatcacaatttccatgcatgca |
21493399 |
T |
|
| Q |
223 |
tagataacgtatacgtagaagaccaatcatgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcag |
322 |
Q |
| |
|
|| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21493398 |
tacataacgtaca--tagaagaccaatcatgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcag |
21493301 |
T |
|
| Q |
323 |
ataaaccaaccttaacattttctgggagaacagctttcaaatcaacagcatgagcaatagtagaaattggagcattgttgttagtggcagcaaccatcaa |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
21493300 |
ataaaccaaccttaacattttctgggagaacagctttcaaatcaacagcatgagcaatagtagaaattggaccattgttgttagtggaagcaaccatcaa |
21493201 |
T |
|
| Q |
423 |
ttgtttagagagagggtcatagattatacttactttgactaatgacccacttaccttattccatggtgttgtcct |
497 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21493200 |
ttgtttagagagagggtcatagattatatttactttgactaatgacccacttaccttattccatgttgttgtcct |
21493126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 160 - 497
Target Start/End: Complemental strand, 21483309 - 21482974
Alignment:
| Q |
160 |
tcacaatctagtatggacttttgtttggc----cataatagttattatcacaatttccatgcatgcatagataacgtatacgtagaagaccaatcatgcc |
255 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||| |||||||||||||||| |||||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
21483309 |
tcacaatctagtatggtcttttgtttagctagccatactagttattatcacaatctccatgcatgcatacataacgta------gaagtccaatcatgcc |
21483216 |
T |
|
| Q |
256 |
aaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaaccaaccttaacattttctgggagaacag |
355 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| |||||||||| |||||||| || |||||||||||||||| |||| || | ||||||||||| |
|
|
| T |
21483215 |
aaggtagaagtgaaagaccacgaatgaatgttttgcaattggcggccgccagatgtaactgttgcagataaaccaaccctaacgttctgtgggagaacag |
21483116 |
T |
|
| Q |
356 |
ctttcaaatcaacagcatgagcaatagtagaaattggagcattgttgttagtggcagcaaccatcaattgtttagagagagggtcatagattatacttac |
455 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| || ||||||||| |||||||||||| ||||| ||||| |||| |||||| ||||||||||| |
|
|
| T |
21483115 |
ctttcaaatcaacagcatgagcaacagttgaaatttgaccattgttgtcagtggcagcaacactcaatgtgttagatagagagtcataaattatacttac |
21483016 |
T |
|
| Q |
456 |
tttgactaatgacccacttaccttattccatggtgttgtcct |
497 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
21483015 |
tttgactaatgacccactcaccctgttccatggtgttgtcct |
21482974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 160 - 504
Target Start/End: Complemental strand, 21489662 - 21489312
Alignment:
| Q |
160 |
tcacaatctagtatggacttttgtttggccataatagttattat----cacaatttccatgcatgcat----agataacgtatacgtagaagaccaatca |
251 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||| |||||| ||||||||||||| | |||||||| ||||| |||||||||| |
|
|
| T |
21489662 |
tcacaatctaatatggacttttgtttagccatactagttattatatatcacaatctccatgcatgcatgcatacataacgta--cgtaggagaccaatca |
21489565 |
T |
|
| Q |
252 |
tgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaaccaaccttaacattttctgggaga |
351 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||| |||||||||| || ||||| || | |||| ||||||||| |||| || ||||||| |
|
|
| T |
21489564 |
tgccaaggttgaagtgaaagaccatgaatgaatctgttgcaattggcggccgacagctgtaactgttccagaaaaaccaaccctaacgttcggtgggaga |
21489465 |
T |
|
| Q |
352 |
acagctttcaaatcaacagcatgagcaatagtagaaattggagcattgttgttagtggcagcaaccatcaattgtttagagagagggtcatagattatac |
451 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||| || ||||| ||||||||||| |||| ||||| |||||| ||| |||||||||||||| |
|
|
| T |
21489464 |
acagctttcaaatcaacaacatcagcaagagtagaaatttgaccattgctgttagtggcaacaacactcaatgtgttagagggagagtcatagattatac |
21489365 |
T |
|
| Q |
452 |
ttactttgactaatgacccacttaccttattccatggtgttgtccttgatgat |
504 |
Q |
| |
|
||||||| || ||||||||||| ||| | |||||||||||||| || |||||| |
|
|
| T |
21489364 |
ttactttcaccaatgacccactcaccctgttccatggtgttgtactggatgat |
21489312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 21483509 - 21483432
Alignment:
| Q |
132 |
tttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttattatcacaat |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483509 |
tttagacatactagttatcatcacaaattcacaatctagtatggacttttgtttagccatactagttattatcacaat |
21483432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 21483640 - 21483520
Alignment:
| Q |
28 |
attcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatggtct |
127 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| || | || |||||||||||| |
|
|
| T |
21483640 |
attcatgacttggttatttaggtaacatta------ggttaagcatggactttatttatagaaaaaccgaaacatatacatgatt---caagtatggtct |
21483550 |
T |
|
| Q |
128 |
tttctttagccatactagttatcatcacaa |
157 |
Q |
| |
|
||| |||||||||||||||||| ||||||| |
|
|
| T |
21483549 |
tttgtttagccatactagttattatcacaa |
21483520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 21489897 - 21489775
Alignment:
| Q |
25 |
gagattcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatgg |
124 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||| ||||||||| || | |||||||||||| |
|
|
| T |
21489897 |
gagattcatgacttagctatttaggtaacatta------gtttaagcatgga-tttatttatagataaattgaaacatatac---atggttcaagtatgg |
21489808 |
T |
|
| Q |
125 |
tcttttctttagccatactagttatcatcacaa |
157 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||| |
|
|
| T |
21489807 |
tctttggtttagccataccagttattatcacaa |
21489775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 21483472 - 21483389
Alignment:
| Q |
118 |
agtatggtcttttctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttattatcacaat |
209 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| ||||||| |||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483472 |
agtatggacttttgtttagccatactagttattatcacaa--------tctaatatggacttttgtttagccatactagttattatcacaat |
21483389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 21483352 - 21483303
Alignment:
| Q |
160 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
209 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483352 |
tcacaatctaatatggacttttgtttagccatactagttattatcacaat |
21483303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 21483395 - 21483346
Alignment:
| Q |
160 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
209 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483395 |
tcacaatctaatatggacttttgtttagccatactagttattatcacaat |
21483346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 21489705 - 21489656
Alignment:
| Q |
160 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
209 |
Q |
| |
|
|||||||||||||||| || |||||| | |||| |||||||||||||||| |
|
|
| T |
21489705 |
tcacaatctagtatggtctattgtttaggcatactagttattatcacaat |
21489656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 21483559 - 21483519
Alignment:
| Q |
169 |
agtatggacttttgtttggccataatagttattatcacaat |
209 |
Q |
| |
|
||||||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483559 |
agtatggtcttttgtttagccatactagttattatcacaat |
21483519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University