View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_high_19 (Length: 504)
Name: NF14307_high_19
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 317 - 482
Target Start/End: Complemental strand, 25610785 - 25610622
Alignment:
| Q |
317 |
cagctaaatctcctataacagaatatcttaaatccttaatctacgaaagcagaatcgataacatctaaatctccctattaacagaatatcttaatatcct |
416 |
Q |
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| T |
25610785 |
cagctaaatctcctaaaacagaatatcttaaatccttaatctacaaaaacagaatcgataacatctaaat-ttcctattaacaaaatatcttaatatact |
25610687 |
T |
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| Q |
417 |
aaaaaagaattgaaagcatcctaatttaattaaaaagttaagaccaaaaaaccgtttctagaattg |
482 |
Q |
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| T |
25610686 |
aaaacatatttgaaagcatcctaatttaatt-caaatttaaaaccaaaaaactgtttctagaattg |
25610622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 317 - 482
Target Start/End: Original strand, 25826704 - 25826866
Alignment:
| Q |
317 |
cagctaaatctcctataacagaatatcttaaatccttaatctacgaaagcagaatcgataacatctaaatctccctattaacagaatatcttaatatcct |
416 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
25826704 |
cagctaaatctcctaaaacagaa-atcttaaatccttaatctacaaaaacagaatcgataacatctaaatct-cctattaacataatatcttaatataac |
25826801 |
T |
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| Q |
417 |
aaaaaagaattgaaagcatcctaatttaattaaaaagttaagaccaaaaaaccgtttctagaattg |
482 |
Q |
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|||| |||||||||||||||||||||||||| ||| || | |||||||||| |||| |||||||| |
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| T |
25826802 |
aaaacagaattgaaagcatcctaatttaatt-caaatttgaaaccaaaaaactgtttgtagaattg |
25826866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 25610926 - 25610843
Alignment:
| Q |
42 |
aactctttattagcttgaaaggagaaaagttttcggtgttagcttcatgataagttcgtctgagagctttttctaaagagaagc |
125 |
Q |
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| T |
25610926 |
aactctttattagcttgaaaggagagaagttttctgtgttagtttcatgataagttcttctcaaaactttttctaaagagaagc |
25610843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 25826513 - 25826557
Alignment:
| Q |
145 |
tagtgcttgatctaaaagagaagctctgataagtccttttagcat |
189 |
Q |
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| T |
25826513 |
tagtgcttgatctaaaagagaatctttgataagtccttttagcat |
25826557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 25826398 - 25826441
Alignment:
| Q |
51 |
ttagcttgaaaggagaaaagttttcggtgttagcttcatgataa |
94 |
Q |
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| T |
25826398 |
ttagcttgaaaggagagaagttttctgcgttagcttcatgataa |
25826441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 25607862 - 25607821
Alignment:
| Q |
134 |
ttaagaagcaatagtgcttgatctaaaagagaagctctgata |
175 |
Q |
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| T |
25607862 |
ttaacaagcattagtgcttggtctaaaagagaagctctgata |
25607821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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