View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14307_high_22 (Length: 487)
Name: NF14307_high_22
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_22 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0975 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 143480 - 143951
Alignment:
| Q |
1 |
tgtatcacatggagtaataaataaaataagataattaatcaaaagtaaccgttattgtgtatagataattaaagatggaatgtttaccaatttagaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143480 |
tgtatcacatggagtaataaataaaataagataattaatcaaaagtaaccgttattgtgtatagataattaaagatggaatgtttaccaatttagaagtt |
143579 |
T |
|
| Q |
101 |
actggcgaagtatctggcatatcaagttcgaatgtaagatctttaagacatgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaac |
200 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143580 |
attggcgaagtatctggcatatcaacttcgaatgtaagatctttaagacatgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaac |
143679 |
T |
|
| Q |
201 |
cgttgaagagtttgatcaggaacatactatttcctacatatgtaaaagacattagtggatttgatgttatattataataatttctgaacttgtcccaacc |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143680 |
cgttgaagagtttgatcaggaatatactatttcctacatatgtaaaagacattagtggatttgatgttatattataataatttctgaacttgtcccaacc |
143779 |
T |
|
| Q |
301 |
ccctataattatttgcatgagcatagatttattaaattcaacttcatgaacatttgctaaaccatcaattaatgtccattggtcatcaagttcatcaaaa |
400 |
Q |
| |
|
|| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143780 |
ccttataattattggcatgagcatagatttgttaaattcaacttcatgaacatttgctaaaccatcaattaatgtccattggtcatcaagttcatcaaaa |
143879 |
T |
|
| Q |
401 |
agttcagcaatagtaagggggtctaattcacagataacctgttatataaataaaatgattttagtgcaatgt |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143880 |
agttcagcaatagtaagggggtctaattcacagataacctgttatataaataaaatgattttagtgcaatgt |
143951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 18059187 - 18059658
Alignment:
| Q |
1 |
tgtatcacatggagtaataaataaaataagataattaatcaaaagtaaccgttattgtgtatagataattaaagatggaatgtttaccaatttagaagtt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18059187 |
tgtatcacattgagtaataaataaaataagataattaatcaaaagtaaccgttattgtgtatagataattaaagatggaatgtttaccaatttagaagtt |
18059286 |
T |
|
| Q |
101 |
actggcgaagtatctggcatatcaagttcgaatgtaagatctttaagacatgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaac |
200 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18059287 |
attggcgaagtatctggcatatcaacttcgaatgtaagatctttaagacatgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaac |
18059386 |
T |
|
| Q |
201 |
cgttgaagagtttgatcaggaacatactatttcctacatatgtaaaagacattagtggatttgatgttatattataataatttctgaacttgtcccaacc |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18059387 |
cgttgaagagtttgatcaggaatatactatttcctacatatgtaaaagacattagtggatttgatgttatattataataatttctgaacttgtcccaacc |
18059486 |
T |
|
| Q |
301 |
ccctataattatttgcatgagcatagatttattaaattcaacttcatgaacatttgctaaaccatcaattaatgtccattggtcatcaagttcatcaaaa |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18059487 |
ccctataattattggcatgagcatagatttgttaaattcaacttcatgaacatttgctaaaccatcaattaatgtccattggtcatcaagttcatcaaaa |
18059586 |
T |
|
| Q |
401 |
agttcagcaatagtaagggggtctaattcacagataacctgttatataaataaaatgattttagtgcaatgt |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18059587 |
agttcagcaatagtaagggggtctaattcacagataacctgttatataaataaaatgattttagtgcaatgt |
18059658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 178; Significance: 8e-96; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 66 - 451
Target Start/End: Original strand, 118895 - 119280
Alignment:
| Q |
66 |
taattaaagatggaatgtttaccaatttagaagttactggcgaagtatctggcatatcaagttcgaatgtaagatctttaagacatgaagtagttaatgt |
165 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||| |||| |||||||| || |||| || ||||| | |||||||||||| |||||||||||| | |
|
|
| T |
118895 |
taattaaagatagaaggtttaccaatttagaagttattggcatagtatctgatatttcaacctcaaatgtcaaatctttaagacaggaagtagttaatct |
118994 |
T |
|
| Q |
166 |
atgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactatttcctacatatgtaaaagacattagtggatttgat |
265 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||||||||||||||||| | ||| ||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
118995 |
gtgataacgtggatattcattatttggtgcagaaccgttgaagagtttgattatgaatatactatgtcctacatatgtgtaagacattagtggatttgat |
119094 |
T |
|
| Q |
266 |
gttatattataataatttctgaacttgtcccaaccccctataattatttgcatgagcatagatttattaaattcaacttcatgaacatttgctaaaccat |
365 |
Q |
| |
|
|| ||||||||| || || |||||||||||||||| | ||| ||| |||||| |||||||| |||||||||||||||||||||||| | ||||||| |
|
|
| T |
119095 |
gtaatattataaaaaattatgaacttgtcccaaccggttgtaaggattggcatgatgatagatttgttaaattcaacttcatgaacatttcccaaaccat |
119194 |
T |
|
| Q |
366 |
caattaatgtccattggtcatcaagttcatcaaaaagttcagcaatagtaagggggtctaattcacagataacctgttatataaat |
451 |
Q |
| |
|
||| || |||||||| | ||||||||||||||||||||||||||| |||| ||| |||||||| || ||||||| |||||||||| |
|
|
| T |
119195 |
caaccaaggtccattgttgatcaagttcatcaaaaagttcagcaatggtaatgggatctaattcgcaaataacctattatataaat |
119280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 65 - 449
Target Start/End: Complemental strand, 17021140 - 17020756
Alignment:
| Q |
65 |
ataattaaagatggaatgtttaccaatttagaagttactggcgaagtatctggcatatcaagttcgaatgtaagatctttaagacatgaagtagttaatg |
164 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||||||| |||| ||||||||| || |||| | ||||| |||||||||||||| |||||||||||| |
|
|
| T |
17021140 |
ataactaaagatagaaagtttaccaatttagaagttattggcatagtatctggtatttcaaccttaaatgttagatctttaagacaggaagtagttaatc |
17021041 |
T |
|
| Q |
165 |
tatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactatttcctacatatgtaaaagacattagtggatttga |
264 |
Q |
| |
|
| ||||| ||||||||||| || ||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17021040 |
tgtgataacgtggatattcgttatttggtgcagaaccgttgaagagtttgattatgaatatactatttcctacatatgtgtaagacattagtggatttga |
17020941 |
T |
|
| Q |
265 |
tgttatattataataatttctgaacttgtcccaaccccctataattatttgcatgagcatagatttattaaattcaacttcatgaacatttgctaaacca |
364 |
Q |
| |
|
||| ||||||||| || | |||||||||||||||| | ||| ||| ||||||| |||||||| |||||||||||||||||||||||| | |||||| |
|
|
| T |
17020940 |
tgtaatattataaaaaaatttgaacttgtcccaaccggttgtaaggattggcatgagtatagatttgttaaattcaacttcatgaacatttcccaaacca |
17020841 |
T |
|
| Q |
365 |
tcaattaatgtccattggtcatcaagttcatcaaaaagttcagcaatagtaagggggtctaattcacagataacctgttatataa |
449 |
Q |
| |
|
|||| || |||||||| | |||||||||||||||||||||||||||||||| || |||||||| || | |||||||||||||| |
|
|
| T |
17020840 |
tcaaccaaggtccattgttgatcaagttcatcaaaaagttcagcaatagtaatggaatctaattcgcaaaaaacctgttatataa |
17020756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 288
Target Start/End: Original strand, 8331819 - 8331976
Alignment:
| Q |
131 |
aatgtaagatctttaagacatgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactat |
230 |
Q |
| |
|
||||||| |||| ||||| |||||||| ||| ||||||| ||||||||||| || ||| ||||||||| ||||| | || | | |||| | ||||| |
|
|
| T |
8331819 |
aatgtaacatctctaagattggaagtagtcaatctatgataacgtggatattcgtttgttgttgtagaaccattgaatatttgggtttggaatacactat |
8331918 |
T |
|
| Q |
231 |
ttcctacatatgtaaaagacattagtggatttgatgttatattataataatttctgaa |
288 |
Q |
| |
|
|||||| ||||| ||||||| ||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
8331919 |
ttcctaattatgtgtaagacataagtgggtttgatgtaatattataaaaatttctgaa |
8331976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 277
Target Start/End: Complemental strand, 33549028 - 33548882
Alignment:
| Q |
131 |
aatgtaagatctttaagacatgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactat |
230 |
Q |
| |
|
||||| |||||||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||| |||||| |
|
|
| T |
33549028 |
aatgtgagatctttaagacaggaagtagtatgtctatgatatcgtggatattcattttttggtgtagaaccattgaagattttgatttggaatgtactat |
33548929 |
T |
|
| Q |
231 |
ttcctacatatgtaaaagacattagtggatttgatgttatattataa |
277 |
Q |
| |
|
| || | |||||| |||||||| ||||||||||| ||||||| |||| |
|
|
| T |
33548928 |
tacccaaatatgtgaaagacataagtggatttgaagttatatgataa |
33548882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 131 - 277
Target Start/End: Complemental strand, 26229527 - 26229382
Alignment:
| Q |
131 |
aatgtaagatctttaagacatgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactat |
230 |
Q |
| |
|
||||| |||||||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||| |||||| |
|
|
| T |
26229527 |
aatgtgagatctttaagacaggaagtagtatgtctatgatatcgtggatattcatt-tttggtgtagaaccattgaagattttgatttggaatgtactat |
26229429 |
T |
|
| Q |
231 |
ttcctacatatgtaaaagacattagtggatttgatgttatattataa |
277 |
Q |
| |
|
| || | |||||| |||||||| ||||||||||| ||||||| |||| |
|
|
| T |
26229428 |
tacccaaatatgtgaaagacataagtggatttgaagttatatgataa |
26229382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 4254811 - 4254919
Alignment:
| Q |
153 |
aagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactatttcctacatatgtaaaagacat |
252 |
Q |
| |
|
||||||| ||| |||| || |||||||||||||| |||||||||||||| | ||| | |||||| |||| | ||||| |||| |||||| |||||||| |
|
|
| T |
4254811 |
aagtagtcaatctatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacat |
4254910 |
T |
|
| Q |
253 |
tagtggatt |
261 |
Q |
| |
|
|||||||| |
|
|
| T |
4254911 |
aagtggatt |
4254919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 131 - 277
Target Start/End: Complemental strand, 134186 - 134040
Alignment:
| Q |
131 |
aatgtaagatctttaagacatgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactat |
230 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||| ||||||||||||| |||||||||||| | ||||||| |||||| |||| |||||| |
|
|
| T |
134186 |
aatgtaagatctttaagacaggaagtagtatgtctatgatattgtggatattcattttttggtgtagaatcattgaagattttgatttggaatgtactat |
134087 |
T |
|
| Q |
231 |
ttcctacatatgtaaaagacattagtggatttgatgttatattataa |
277 |
Q |
| |
|
| || | |||||| |||||||| ||||||||||| ||||||| |||| |
|
|
| T |
134086 |
tacccaaatatgtgaaagacataagtggatttgaagttatatgataa |
134040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 131 - 429
Target Start/End: Complemental strand, 19777686 - 19777388
Alignment:
| Q |
131 |
aatgtaagatctttaagacatgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactat |
230 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||| |||||| |||||||||||||| |||||||||| ||| |||| | || || |||| |||||| |
|
|
| T |
19777686 |
aatgtaacatctttaagtcttgaagtagtcaatcgatgatagcgtggatattcatttgttggtgtagatccggtgaaaatttgaatttggaatgtactat |
19777587 |
T |
|
| Q |
231 |
ttcctacatatgtaaaagacattagtggatttgatgttatattataataatttctgaacttgtcccaaccccctataattatttgcatgagcatagattt |
330 |
Q |
| |
|
|||||| |||||| ||||||| ||| | |||||| | ||||||||| ||||||||| | || ||| || | ||| ||| |||| || |||||||| |
|
|
| T |
19777586 |
ttcctaaatatgtgtaagacataagtaggtttgatataatattataaacatttctgaattggtgccatccttccctaagcattggcattagtatagattt |
19777487 |
T |
|
| Q |
331 |
attaaattcaacttcatgaacatttgctaaaccatcaattaatgtccattggtcatcaagttcatcaaaaagttcagcaatagtaagggggtctaattc |
429 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||| || || ||||| || || | |||||||||| |||||||||||||| |||| || |||||||| |
|
|
| T |
19777486 |
gttaaattcaacttcatgattatttccataaccatctatcaaggtccaatgttcttgaagttcatcataaagttcagcaataataagcggatctaattc |
19777388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 20529163 - 20529271
Alignment:
| Q |
153 |
aagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactatttcctacatatgtaaaagacat |
252 |
Q |
| |
|
||||||| ||| |||| || ||||||||||||| |||||||||||||| | ||| | |||||| |||| | ||||| |||| |||||| |||||||| |
|
|
| T |
20529163 |
aagtagtcaatctatggtaatgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacat |
20529262 |
T |
|
| Q |
253 |
tagtggatt |
261 |
Q |
| |
|
|||||||| |
|
|
| T |
20529263 |
aagtggatt |
20529271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 131 - 349
Target Start/End: Original strand, 23961377 - 23961594
Alignment:
| Q |
131 |
aatgtaagatctttaagacatgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactat |
230 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||| ||||||||||||| |||||||||||||| ||||||| |||||| |||| |||||| |
|
|
| T |
23961377 |
aatgtaagatctttaagacaggaagtagtatgtttatgatat-gtggatattcattttttggtgtagaaccattgaagattttgatttggaatgtactat |
23961475 |
T |
|
| Q |
231 |
ttcctacatatgtaaaagacattagtggatttgatgttatattataataatttctgaacttgtcccaaccccctataattatttgcatgagcatagattt |
330 |
Q |
| |
|
| || | |||||| |||||||| ||||||||||| | ||||| |||| || |||||| | || |||||| || ||| |||| |||| |||||| |||| |
|
|
| T |
23961476 |
tacccaaatatgtgaaagacataagtggatttgaaggtatatgataaaaaaatctgaattggtgccaaccttctgtaagtattggcataagcatacattt |
23961575 |
T |
|
| Q |
331 |
attaaattcaacttcatga |
349 |
Q |
| |
|
||||| | ||||| |||| |
|
|
| T |
23961576 |
gttaaactgaacttgatga |
23961594 |
T |
|
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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 288
Target Start/End: Complemental strand, 40771260 - 40771103
Alignment:
| Q |
131 |
aatgtaagatctttaagacatgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactat |
230 |
Q |
| |
|
||||||| |||| ||||| |||||||| ||| ||||||| ||||||||||| || ||| ||||||||| ||||| | || | | |||| | ||||| |
|
|
| T |
40771260 |
aatgtaacatctctaagattggaagtagtcaatctatgataacgtggatattcgtttgttgttgtagaaccattgaatatttgggtttggaatacactat |
40771161 |
T |
|
| Q |
231 |
ttcctacatatgtaaaagacattagtggatttgatgttatattataataatttctgaa |
288 |
Q |
| |
|
|||||| |||||| ||||||| ||||| |||||||| | ||||||| |||||||||| |
|
|
| T |
40771160 |
ttcctaaatatgtgtaagacataagtgggtttgatgtaaaattataaaaatttctgaa |
40771103 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 276
Target Start/End: Original strand, 20217217 - 20217342
Alignment:
| Q |
151 |
tgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactatttcctacatatgtaaaagac |
250 |
Q |
| |
|
||||||||||||| |||| || | |||||||||| | |||| ||||||||| |||| | |||||| | || | |||||| |||| ||| || ||||| |
|
|
| T |
20217217 |
tgaagtagttaatctatgctaccttggatattcaatttttgttgtagaaccactgaaaattttgatttgaaaaacactattacctaaatacgtgtaagac |
20217316 |
T |
|
| Q |
251 |
attagtggatttgatgttatattata |
276 |
Q |
| |
|
|| |||||||||| |||||||||||| |
|
|
| T |
20217317 |
ataagtggatttgttgttatattata |
20217342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 19287537 - 19287645
Alignment:
| Q |
153 |
aagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactatttcctacatatgtaaaagacat |
252 |
Q |
| |
|
||||||| ||| |||| || |||||||||||||| |||||||||||||| | ||| | |||||| | || |||||| |||| |||||| |||||||| |
|
|
| T |
19287537 |
aagtagtcaatatatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttgaaatttactatcacctaaatatgtgaaagacat |
19287636 |
T |
|
| Q |
253 |
tagtggatt |
261 |
Q |
| |
|
|||||||| |
|
|
| T |
19287637 |
aagtggatt |
19287645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 300
Target Start/End: Original strand, 21660960 - 21661108
Alignment:
| Q |
152 |
gaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactatttcctacatatgtaaaagaca |
251 |
Q |
| |
|
||||||||||| |||| || ||||||||||| || |||||||| ||||| ||||| | |||||| | || |||||||| ||| | |||| ||||||| |
|
|
| T |
21660960 |
gaagtagttaacctatggtaacgtggatattccttttttggtgtcgaaccattgaaaattttgattaaaaaggtactattttctaaaaatgtgaaagaca |
21661059 |
T |
|
| Q |
252 |
ttagtggatttgatgttatattataataatttctgaacttgtcccaacc |
300 |
Q |
| |
|
||| ||||||| |||| | | |||| ||||||| |||| || |||||| |
|
|
| T |
21661060 |
ttaatggatttaatgtgacgtgataagaatttctaaactggtgccaacc |
21661108 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 27621507 - 27621411
Alignment:
| Q |
165 |
tatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactatttcctacatatgtaaaagacattagtggatt |
261 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||| ||||| | ||| || |||| |||||| ||| |||||| |||||||| |||||||| |
|
|
| T |
27621507 |
tatgataacgtggatattcattttttggcgtagaaccattgaaaattttaatttggaaatgactattatctagatatgtgaaagacataagtggatt |
27621411 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 21897781 - 21897889
Alignment:
| Q |
153 |
aagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactatttcctacatatgtaaaagacat |
252 |
Q |
| |
|
||||||| ||| |||| || |||||||||||||| |||||||||||||| | ||| | |||||| |||| | ||||| |||| |||||| |||||||| |
|
|
| T |
21897781 |
aagtagtcaatctatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacat |
21897880 |
T |
|
| Q |
253 |
tagtggatt |
261 |
Q |
| |
|
|||||||| |
|
|
| T |
21897881 |
aagtggatt |
21897889 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0975 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0975
Description:
Target: scaffold0975; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 3653 - 3557
Alignment:
| Q |
165 |
tatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactatttcctacatatgtaaaagacattagtggatt |
261 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||| ||||| | ||| || |||| |||||| ||| |||||| |||||||| |||||||| |
|
|
| T |
3653 |
tatgataacgtggatattcattttttggcgtagaaccattgaaaattttaatttggaaatgactattatctagatatgtgaaagacataagtggatt |
3557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 806 - 710
Alignment:
| Q |
165 |
tatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaacatactatttcctacatatgtaaaagacattagtggatt |
261 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||| ||||| | ||| || |||| |||||| ||| |||||| |||||||| |||||||| |
|
|
| T |
806 |
tatgataacgtggatattcattttttggcgtagaaccattgaaaaatttaatttggaaatgactattatctagatatgtgaaagacataagtggatt |
710 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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