View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_high_23 (Length: 486)
Name: NF14307_high_23
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 36540645 - 36540176
Alignment:
| Q |
1 |
ttaaatggttatctttacctttgtattccaaacattgaaatctgacgaaaagcaaattcaagaggaaaatgtaatcaactatctatatataattaannnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36540645 |
ttaaatggttatctttacctttgtattccaaacattgaaatctaacgaaaagcaaattcaagaggaaaatgtaatcaaccatctatatataattaatttt |
36540546 |
T |
|
| Q |
101 |
nnnaaaacaatctatatataataattaattaaatagcaacatgaaatagaatagcacaaatacatgttaatttgtatctttctaattatttatacatggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36540545 |
tttaaaacaatctatatataataattaattaaatagcaacatgaaatagaatagcacaaatacatgttaatttgtatctttctgattatttatacatggt |
36540446 |
T |
|
| Q |
201 |
gtgcatcatcatcttgctagctgcttgtttttctggtattttggttgttgttaaggaaatcaagcaagacagtactcttacacttaggacattttggatt |
300 |
Q |
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| T |
36540445 |
gtgcatcatcatcttgctagctgcttgtttttctggtattttgtttgttgttaaggaaatcaagcaagacagtactcttacacttagggcattttggatt |
36540346 |
T |
|
| Q |
301 |
gggatcagcctcggataacaaaacatacatgtgacattgaagacaacctaggagaaccatagcacttgtctcttcctcagcctcagaagacacacatgat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36540345 |
gggatcagcctcggataacaaaacatacatgtgacattgaagacaacctaggagaaccatagcacttgtctcttcttcagcctcagaagacacacatgat |
36540246 |
T |
|
| Q |
401 |
aagtctgtactacaaactgatgaagtagtcgaaaactcggaagacatagctgacgatgatgagtttatag |
470 |
Q |
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| T |
36540245 |
aagtccgtactacaaactgatgaagtagtcgaaaactcggaagacatagctgacgatgatgagtttatag |
36540176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 18904069 - 18904119
Alignment:
| Q |
249 |
tgttaaggaaatcaagcaagacagtactcttacacttaggacattttggat |
299 |
Q |
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||||||| ||||||||||| ||||||||||| ||||| |||||||| |||| |
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| T |
18904069 |
tgttaagaaaatcaagcaacacagtactcttgcacttgggacatttgggat |
18904119 |
T |
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