View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14307_high_25 (Length: 483)

Name: NF14307_high_25
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14307_high_25
NF14307_high_25
[»] chr5 (23 HSPs)
chr5 (19-460)||(37408314-37408755)
chr5 (41-180)||(41996205-41996344)
chr5 (41-128)||(42840495-42840582)
chr5 (41-127)||(24655513-24655599)
chr5 (41-127)||(29416782-29416868)
chr5 (41-127)||(39724553-39724639)
chr5 (60-171)||(21699533-21699644)
chr5 (41-128)||(28019148-28019235)
chr5 (47-129)||(42777784-42777866)
chr5 (60-171)||(42730048-42730159)
chr5 (222-279)||(42840737-42840794)
chr5 (211-267)||(41996375-41996431)
chr5 (48-172)||(42413949-42414073)
chr5 (206-315)||(39724714-39724823)
chr5 (224-320)||(42729905-42730001)
chr5 (246-320)||(21699400-21699474)
chr5 (373-411)||(42411548-42411586)
chr5 (211-277)||(42414622-42414688)
chr5 (78-127)||(16486776-16486825)
chr5 (96-181)||(42406629-42406714)
chr5 (210-279)||(42411680-42411749)
chr5 (78-122)||(40549282-40549326)
chr5 (367-415)||(42840882-42840930)
[»] chr1 (5 HSPs)
chr1 (52-114)||(19225436-19225498)
chr1 (52-114)||(19219179-19219241)
chr1 (52-114)||(19221525-19221587)
chr1 (283-322)||(368599-368638)
chr1 (47-128)||(361884-361965)
[»] scaffold0068 (2 HSPs)
scaffold0068 (60-171)||(14266-14377)
scaffold0068 (246-320)||(14436-14510)
[»] scaffold0129 (1 HSPs)
scaffold0129 (41-128)||(17137-17224)
[»] chr8 (7 HSPs)
chr8 (77-129)||(15631880-15631932)
chr8 (56-119)||(15338146-15338209)
chr8 (56-119)||(15427211-15427274)
chr8 (56-119)||(15518515-15518578)
chr8 (366-414)||(12705467-12705515)
chr8 (366-414)||(12712114-12712162)
chr8 (77-129)||(15600597-15600649)
[»] chr6 (2 HSPs)
chr6 (56-128)||(29300085-29300157)
chr6 (56-123)||(29012844-29012911)
[»] chr2 (1 HSPs)
chr2 (56-128)||(44937794-44937866)
[»] chr4 (1 HSPs)
chr4 (49-114)||(48741975-48742040)


Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 37408314 - 37408755
Alignment:
Q  19 cttccctgctccaacaaaatggtcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatg 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37408314 cttccctgctccaacaaaatggccaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatg 37408413  T
Q  119 tgaaatgtagaagcctcggtatcatgtaccataaaagcaatagatccattcaataccatcaagcgtcttcggaccaaaggaaaatccaaactatcatata 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37408414 tgaaatgtagaagcctcagtatcatgtaccataaaagcaatagatccattcaataccatcaagcgtcttcggaccaaatgaaaatccaaactatcatata 37408513  T
Q  219 cgtaagagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaatagacatctgtttcagttttatccaaccaatgacacactcc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37408514 cgtaagagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaatagacatctgtttcagttttatccaaccaatgacacactcc 37408613  T
Q  319 attcaaatatgcgtgttcaatgctacagtaagaatgtggcacatcagcatcaattttcttccaagagttactgtttaggctatacatctcccagaagtgt 418  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37408614 attcaagtatgcgtgttcaatgctacagtaagaatgtggcacatcagcatcaattttcttccaagagttactgtttaggctatacatctcccacaagtgt 37408713  T
Q  419 tcagatggcacatgatagataggaacaatttttggagaataa 460  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  37408714 tcagatggcacatgatagataggaacgatttttggagaataa 37408755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 41 - 180
Target Start/End: Original strand, 41996205 - 41996344
Alignment:
Q  41 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtat 140  Q
    |||||| || |||| || ||||||| ||| ||||| |||||||||||||||||| | || |||||||||||| |||||||||||||||| | || |||||    
T  41996205 tcaaggtaatgtaaaggcccaacaatgaagagcttagtccatgattcctttacatcaagttcacccaaaattaaaatgtgaaatgtagatgtcttggtat 41996304  T
Q  141 catgtaccataaaagcaatagatccattcaataccatcaa 180  Q
     || || ||||||||||||||||||||| |||||||||||    
T  41996305 gatttaacataaaagcaatagatccatttaataccatcaa 41996344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 42840495 - 42840582
Alignment:
Q  41 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 128  Q
    ||||||||||||||||| |||||||  || |  || ||||||||||| |||||||| || ||||||||||||||||||||||||||||    
T  42840495 tcaaggcaaggtaagggaccaacaataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaatgtag 42840582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 24655599 - 24655513
Alignment:
Q  41 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgta 127  Q
    ||||||||||| ||||| || ||||  || | ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  24655599 tcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgta 24655513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 29416782 - 29416868
Alignment:
Q  41 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgta 127  Q
    ||||||||||| ||||| || ||||  || | ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  29416782 tcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgta 29416868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 39724553 - 39724639
Alignment:
Q  41 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgta 127  Q
    |||||||||||||| |||||||||| ||| || || ||||||||||| |||| |||||| || ||||||||||| ||||||||||||    
T  39724553 tcaaggcaaggtaaaggtccaacaatgaagagtttagtccatgattcttttataccgagttcccccaaaattgatatgtgaaatgta 39724639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 60 - 171
Target Start/End: Complemental strand, 21699644 - 21699533
Alignment:
Q  60 caacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtaccataaaagcaat 159  Q
    |||| ||||| || || |||||||| ||||||| ||||||||||||||||||| ||||||||| | |||| | |||  ||| |||||  || ||||||||    
T  21699644 caactacgaagagtttggtccatgaatcctttataccgagctcacccaaaattaaaatgtgaagtatagatgtctctatataatgtaagattaaagcaat 21699545  T
Q  160 agatccattcaa 171  Q
    ||||||||||||    
T  21699544 agatccattcaa 21699533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 28019235 - 28019148
Alignment:
Q  41 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 128  Q
    |||||||||||||| ||||| |||||||| |  || |||||||||||||||||||  || |||||||| ||||||||||||| |||||    
T  28019235 tcaaggcaaggtaatggtcctacaacgaagattttagtccatgattcctttacactaagttcacccaagattgaaatgtgaattgtag 28019148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 42777866 - 42777784
Alignment:
Q  47 caaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtaga 129  Q
    ||||||||||| || |||| ||| | ||| ||||||||||| ||||||||||| || || |||||||||||||||||||||||    
T  42777866 caaggtaagggccctacaatgaagatcttagtccatgattcttttacaccgagttcgcctaaaattgaaatgtgaaatgtaga 42777784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 171
Target Start/End: Complemental strand, 42730159 - 42730048
Alignment:
Q  60 caacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtaccataaaagcaat 159  Q
    |||| ||||| || || |||||||| ||||||| |||||| |||||||||||| ||||||||| | |||| | |||  ||| |||||  || ||||||||    
T  42730159 caactacgaagagtttggtccatgaatcctttataccgaggtcacccaaaattaaaatgtgaagtatagatgtctctatataatgtaagatgaaagcaat 42730060  T
Q  160 agatccattcaa 171  Q
    ||||||||||||    
T  42730059 agatccattcaa 42730048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 42840737 - 42840794
Alignment:
Q  222 aagagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaata 279  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||| || ||||||||    
T  42840737 aagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaata 42840794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 41996375 - 41996431
Alignment:
Q  211 atcatatacgtaagagggtatgggtgttgtaataaaagattccttgcagaagtcaaa 267  Q
    ||||| || |||||||||||||||||||||||| |||||||| |||| |||||||||    
T  41996375 atcatttatgtaagagggtatgggtgttgtaatgaaagattcattgctgaagtcaaa 41996431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 42414073 - 42413949
Alignment:
Q  48 aaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtac 147  Q
    ||||||||||||||||||  || || || |||||||| ||||||||||| |  || ||||||||||||||||||| |||| | | ||| |||| || ||     
T  42414073 aaggtaagggtccaacaataaagagtttagtccatgactcctttacaccaaattcgcccaaaattgaaatgtgaattgtaaatgtctcagtataatttaa 42413974  T
Q  148 cataaaagcaatagatccattcaat 172  Q
     ||  |||||||||| |||||||||    
T  42413973 gatgtaagcaatagagccattcaat 42413949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 315
Target Start/End: Original strand, 39724714 - 39724823
Alignment:
Q  206 aaactatcatatacgtaagagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaatagacatctgtttcagttttatccaacc 305  Q
    ||||||||||  ||||||||||||||||| |||||||  | |||||| |||  ||||| ||| |||||||| |  | || | |||||||||||  |||||    
T  39724714 aaactatcatccacgtaagagggtatgggagttgtaagcacagattcgttgttgaagttaaatgacaccaattgaaaatgtttttcagttttactcaacc 39724813  T
Q  306 aatgacacac 315  Q
    ||||||||||    
T  39724814 aatgacacac 39724823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 42730001 - 42729905
Alignment:
Q  224 gagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaatagacatctgtttcagttttatccaaccaatgacacactccat 320  Q
    ||||||||| ||||||||||  ||||||| |||  ||||||||| |||||||||||  ||| || |||  ||||| || |||||| |||||||||||    
T  42730001 gagggtatgagtgttgtaatgcaagattcattgttgaagtcaaatgacaccaaatatgcatgtgcttctattttagcccaccaattacacactccat 42729905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 320
Target Start/End: Complemental strand, 21699474 - 21699400
Alignment:
Q  246 aagattccttgcagaagtcaaacgacaccaaatagacatctgtttcagttttatccaaccaatgacacactccat 320  Q
    ||||||| |||| ||||||||| |||||||||||  ||| || |||  ||||| || ||||||||||||||||||    
T  21699474 aagattcattgctgaagtcaaatgacaccaaatatgcatgtgcttctcttttagcccaccaatgacacactccat 21699400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 42411586 - 42411548
Alignment:
Q  373 tttcttccaagagttactgtttaggctatacatctccca 411  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  42411586 tttcttccaagagttactgttaaggctataaatctccca 42411548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 277
Target Start/End: Complemental strand, 42414688 - 42414622
Alignment:
Q  211 atcatatacgtaagagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaa 277  Q
    ||||| || ||||||||||||||||||| ||||  |||||||  ||| ||||||||| |||||||||    
T  42414688 atcatctatgtaagagggtatgggtgttataatgcaagattcactgctgaagtcaaatgacaccaaa 42414622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 16486776 - 16486825
Alignment:
Q  78 tccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgta 127  Q
    ||||||||| ||||||||| |  ||||| |||||||||||||||||||||    
T  16486776 tccatgatttctttacaccaaattcacctaaaattgaaatgtgaaatgta 16486825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 42406714 - 42406629
Alignment:
Q  96 cgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtaccataaaagcaatagatccattcaataccatcaag 181  Q
    |||| |||| ||||||||||||||||||||||||   ||  ||||||| ||  || |||||||||||  ||||||||| |||||||    
T  42406714 cgagttcactcaaaattgaaatgtgaaatgtagatatctttgtatcatttaagatgaaagcaatagactcattcaatatcatcaag 42406629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 42411749 - 42411680
Alignment:
Q  210 tatcatatacgtaagagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaata 279  Q
    |||||| || ||||||||||||||||  | ||||  |||||||  ||| |||||||||||||||||||||    
T  42411749 tatcatttatgtaagagggtatgggtaatttaatgcaagattcactgctgaagtcaaacgacaccaaata 42411680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 40549326 - 40549282
Alignment:
Q  78 tccatgattcctttacaccgagctcacccaaaattgaaatgtgaa 122  Q
    ||||||||||||| |||||||  |||||||||||||| |||||||    
T  40549326 tccatgattccttcacaccgacttcacccaaaattgatatgtgaa 40549282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 42840882 - 42840930
Alignment:
Q  367 atcaattttcttccaagagttactgtttaggctatacatctcccagaag 415  Q
    |||||||||| ||||||||||  ||||||||||||| |||||| |||||    
T  42840882 atcaattttcctccaagagttgttgtttaggctataaatctccgagaag 42840930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 19225436 - 19225498
Alignment:
Q  52 taagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattga 114  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  19225436 taagggtccaacatcgaagagcttagtccatgattccttgacaccgagctcacccaaaattga 19225498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 19219179 - 19219241
Alignment:
Q  52 taagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattga 114  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||| ||||||||||||||    
T  19219179 taagggtccaacatcgaagagcttagtccatgattccttgacaccgagttcacccaaaattga 19219241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 19221587 - 19221525
Alignment:
Q  52 taagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattga 114  Q
    ||||||||||||| | || ||||| |||||||||||||| ||| |||||||||||||||||||    
T  19221587 taagggtccaacatcaaagagcttagtccatgattccttcacatcgagctcacccaaaattga 19221525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 368638 - 368599
Alignment:
Q  283 atctgtttcagttttatccaaccaatgacacactccattc 322  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  368638 atctgtttcagttttacccaaccaatgacacaccccattc 368599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 361965 - 361884
Alignment:
Q  47 caaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 128  Q
    |||| ||| |||||||||| ||| |||||  ||||||||||||| |||||||  ||||| | |||||| |||||||| ||||    
T  361965 caagataatggtccaacaatgaagagctttatccatgattccttcacaccgatttcaccaagaattgatatgtgaaaagtag 361884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 14266 - 14377
Alignment:
Q  60 caacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtaccataaaagcaat 159  Q
    |||| ||||| || || |||||||| ||||||| ||||||||||||||||||| ||||||||| | |||| | |||  ||| |||||  || ||||||||    
T  14266 caactacgaagagtttggtccatgaatcctttataccgagctcacccaaaattaaaatgtgaagtatagatgtctctatataatgtaagattaaagcaat 14365  T
Q  160 agatccattcaa 171  Q
    ||||||||||||    
T  14366 agatccattcaa 14377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 14436 - 14510
Alignment:
Q  246 aagattccttgcagaagtcaaacgacaccaaatagacatctgtttcagttttatccaaccaatgacacactccat 320  Q
    ||||||| |||| ||||||||| |||||||||||  ||| || |||  ||||| || ||||||||||||||||||    
T  14436 aagattcattgctgaagtcaaatgacaccaaatatgcatgtgcttctcttttagcccaccaatgacacactccat 14510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 17137 - 17224
Alignment:
Q  41 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 128  Q
    |||| ||||||||| ||||||| |||||| || || ||||| || ||||| |||||||| ||||||| ||| ||||||||||| ||||    
T  17137 tcaatgcaaggtaaaggtccaataacgaagagtttagtccaagactccttcacaccgagttcacccagaatagaaatgtgaaaagtag 17224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 15631880 - 15631932
Alignment:
Q  77 gtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtaga 129  Q
    |||||||||||  |||||||| | ||||||||||||||||||||| |||||||    
T  15631880 gtccatgattctattacaccgggttcacccaaaattgaaatgtgatatgtaga 15631932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 15338146 - 15338209
Alignment:
Q  56 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgt 119  Q
    ||||||||||| ||||| || ||||||||||| || || ||||| |||||||||||||| ||||    
T  15338146 ggtccaacaacaaatagtttagtccatgattctttcacgccgagttcacccaaaattgatatgt 15338209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 15427211 - 15427274
Alignment:
Q  56 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgt 119  Q
    ||||||||||| ||||| || ||||||||||| || || ||||| |||||||||||||| ||||    
T  15427211 ggtccaacaacaaatagtttagtccatgattctttcacgccgagttcacccaaaattgatatgt 15427274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 15518515 - 15518578
Alignment:
Q  56 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgt 119  Q
    ||||||||||| ||||| || ||||||||||| || || ||||| |||||||||||||| ||||    
T  15518515 ggtccaacaacaaatagtttagtccatgattctttcacgccgagttcacccaaaattgatatgt 15518578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 414
Target Start/End: Complemental strand, 12705515 - 12705467
Alignment:
Q  366 catcaattttcttccaagagttactgtttaggctatacatctcccagaa 414  Q
    ||||||||||| ||||||||||||| || |||||||| | |||||||||    
T  12705515 catcaattttcctccaagagttacttttgaggctatataactcccagaa 12705467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 414
Target Start/End: Original strand, 12712114 - 12712162
Alignment:
Q  366 catcaattttcttccaagagttactgtttaggctatacatctcccagaa 414  Q
    |||| |||||| ||||||||||||| || |||||||| |||||||||||    
T  12712114 catcgattttcctccaagagttacttttgaggctatatatctcccagaa 12712162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 15600597 - 15600649
Alignment:
Q  77 gtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtaga 129  Q
    |||||||||||  |||||||| | |||||||||||||| |||||| |||||||    
T  15600597 gtccatgattctattacaccgggttcacccaaaattgagatgtgatatgtaga 15600649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 29300157 - 29300085
Alignment:
Q  56 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 128  Q
    |||||||||  ||| || || ||||| |||||||||| || |||||||||||||||||| |||||||| ||||    
T  29300157 ggtccaacattgaagagattggtccacgattcctttatactgagctcacccaaaattgatatgtgaaaagtag 29300085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 29012911 - 29012844
Alignment:
Q  56 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaa 123  Q
    |||||||||| ||| || || |||||||||||||| |||||||  || ||||||||||| ||||||||    
T  29012911 ggtccaacaatgaagagtttggtccatgattccttcacaccgaaatcccccaaaattgatatgtgaaa 29012844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 44937794 - 44937866
Alignment:
Q  56 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 128  Q
    ||||||||||| || || || ||||||||||| || || ||||| |||||||||||||| |||||||| ||||    
T  44937794 ggtccaacaacaaagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaaagtag 44937866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 48741975 - 48742040
Alignment:
Q  49 aggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattga 114  Q
    |||||||||||||| || ||| || || ||||| |||||||| |||||||| ||||| ||||||||    
T  48741975 aggtaagggtccaaaaatgaagagtttagtccaagattccttcacaccgagttcacctaaaattga 48742040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University