View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14307_high_3 (Length: 690)

Name: NF14307_high_3
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14307_high_3
NF14307_high_3
[»] chr4 (9 HSPs)
chr4 (18-367)||(49158769-49159124)
chr4 (399-656)||(49159176-49159429)
chr4 (306-368)||(14043948-14044010)
chr4 (304-360)||(17115920-17115976)
chr4 (307-359)||(18862402-18862454)
chr4 (309-362)||(43148556-43148609)
chr4 (404-459)||(42451963-42452018)
chr4 (304-362)||(542284-542341)
chr4 (306-362)||(4787072-4787128)
[»] chr7 (8 HSPs)
chr7 (304-367)||(1295576-1295639)
chr7 (303-376)||(16984321-16984393)
chr7 (306-362)||(2847151-2847207)
chr7 (302-336)||(145674-145708)
chr7 (399-461)||(2847264-2847326)
chr7 (307-340)||(28065608-28065641)
chr7 (308-365)||(37586524-37586581)
chr7 (305-337)||(11827916-11827948)
[»] chr2 (7 HSPs)
chr2 (306-367)||(34608775-34608836)
chr2 (306-361)||(25770409-25770464)
chr2 (306-362)||(25780903-25780959)
chr2 (306-362)||(26170176-26170232)
chr2 (399-459)||(26227813-26227873)
chr2 (399-453)||(41101315-41101370)
chr2 (306-362)||(41101147-41101203)
[»] chr8 (6 HSPs)
chr8 (303-362)||(15892033-15892092)
chr8 (306-362)||(32158709-32158765)
chr8 (404-459)||(33609438-33609493)
chr8 (404-461)||(32158622-32158679)
chr8 (428-461)||(40520067-40520100)
chr8 (305-341)||(32035747-32035783)
[»] chr1 (4 HSPs)
chr1 (306-367)||(5270142-5270203)
chr1 (305-359)||(2093635-2093689)
chr1 (306-347)||(47542948-47542989)
chr1 (415-459)||(10884523-10884567)
[»] chr6 (6 HSPs)
chr6 (305-361)||(24359195-24359251)
chr6 (315-363)||(3442804-3442851)
chr6 (306-359)||(2038318-2038371)
chr6 (314-362)||(10378723-10378771)
chr6 (304-352)||(14469142-14469190)
chr6 (305-337)||(35018821-35018853)
[»] chr5 (2 HSPs)
chr5 (305-359)||(22858539-22858593)
chr5 (303-335)||(2598536-2598568)
[»] chr3 (1 HSPs)
chr3 (306-362)||(44893611-44893667)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 49158769 - 49159124
Alignment:
Q  18 ctaaggtaatgcactcaaaaaa-ctcaacatgcataaattacagagtaaaaattaagaaccctaaatttcgttaagcggtgaaacnnnnnnnntaagcaa 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        |||||||    
T  49158769 ctaaggtaatgcactcaaaaaaactcaacatgcataaattacagagtaaaaattaagaaccctaaatttcgttaagctgtgaaacaaaaaaaataagcaa 49158868  T
Q  117 aacagaaaagcggaatttagaatagagaggatcgaaagggaaaacatcatagagtgaaaatgaatagagaaaaaatggaaccttggcagtaactggtagc 216  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49158869 aacagaaaagcagaatttagaatagagaggatcgaaagggaaaacagcatagagtgaaaatgaatagagaaaaaatggaaccttggcagtaactggtagc 49158968  T
Q  217 gatgaagaagagaaattgaagtggagaccaagtttctgacttgtgaaaatgacacaaaactgcacaa-----tttcctttaaatattgttcaaagaattc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     ||||||||||||||||||||||||||||    
T  49158969 gatgaagaagagaaattgaagtggagaccaagtttctgacttgtgaaaatgacagaaaactgcacaatttcctttcctttaaatattgttcaaagaattc 49159068  T
Q  312 tgctctttacccaacacattttgctcattccaaactgaaattccaaaaatatccct 367  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  49159069 tgctctttacccaacacattttgctcattccaaactaaaattccaaaaatacccct 49159124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 399 - 656
Target Start/End: Original strand, 49159176 - 49159429
Alignment:
Q  399 ggggaattatagttatttcagttaagaatgagcattttttgttggataaagagcagaattcttgctcaaatcttcatcttatcatccaagcccgtttggc 498  Q
    ||||||||||||| |||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49159176 ggggaattatagtcatttcagttgggaattagcattttttgttggataaagagcagaattcttgctcaaatcttcatcttatcatccaagcccgtttggc 49159275  T
Q  499 ccaaaatcataaataccaaaagtctattattctgtccgttcagacattttctttcaacactcattttattatcggatgaatatgatattcaaataggcat 598  Q
    ||||||||||||||||||||   | ||| ||  ||||     |||| ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||    
T  49159276 ccaaaatcataaataccaaagacccattgtttagtcc-----gacactttcttttaacgctcattttattattggatgaatatgatattcaaataggcat 49159370  T
Q  599 tgccatttaaaaaataatgt-tttatccatgtggatttatgagatttatataatggtta 656  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  49159371 tgccatttaaaaaataatgtccttatccatgtggatttatgagatttatataatggtta 49159429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 306 - 368
Target Start/End: Original strand, 14043948 - 14044010
Alignment:
Q  306 gaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaatatcccta 368  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||    
T  14043948 gaattctgctctttaccaaacacattttgctcattcccaactgaaattcctaaaatgtcccta 14044010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 17115976 - 17115920
Alignment:
Q  304 aagaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaa 360  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||||| |||||    
T  17115976 aagaattctgctctttacctaacacattttgctcattctcaactgaaattcaaaaaa 17115920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 18862454 - 18862402
Alignment:
Q  307 aattctgctctttacccaacacattttgctcattccaaactgaaattccaaaa 359  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||| |||||    
T  18862454 aattctgctcttaacctaacacattttgctcattcccaactgaaatttcaaaa 18862402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 309 - 362
Target Start/End: Original strand, 43148556 - 43148609
Alignment:
Q  309 ttctgctctttacccaacacattttgctcattccaaactgaaattccaaaaata 362  Q
    ||||||||||||||||| |||||||||||||||| |||| |||||  |||||||    
T  43148556 ttctgctctttacccaatacattttgctcattcccaactaaaattttaaaaata 43148609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 459
Target Start/End: Original strand, 42451963 - 42452018
Alignment:
Q  404 attatagttatttcagttaagaatgagcattttttgttggataaagagcagaattc 459  Q
    |||||||| ||||||||| ||||||| |||||||  ||||||||||| ||||||||    
T  42451963 attatagtcatttcagttgagaatgaacatttttgattggataaagaacagaattc 42452018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 362
Target Start/End: Original strand, 542284 - 542341
Alignment:
Q  304 aagaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaata 362  Q
    ||||||| ||||| |||||||||| ||||||||| |||  |||||||||||||||||||    
T  542284 aagaattttgctcattacccaacatattttgctc-ttctcaactgaaattccaaaaata 542341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 4787072 - 4787128
Alignment:
Q  306 gaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaata 362  Q
    ||||||||||||||||| |||| |||||||||||||  || || |||| ||||||||    
T  4787072 gaattctgctctttaccgaacatattttgctcattctcaagtgcaatttcaaaaata 4787128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 304 - 367
Target Start/End: Complemental strand, 1295639 - 1295576
Alignment:
Q  304 aagaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaatatccct 367  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||    
T  1295639 aagaattctgctctttacccaacacattttgctcattcctaactgaaatttcaaaaatacccct 1295576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 16984321 - 16984393
Alignment:
Q  303 aaagaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaatatccctatctgagtt 376  Q
    |||||||||||||||  ||||||||||||||||||||||| |||| ||||||||||| ||||||| | ||||||    
T  16984321 aaagaattctgctcta-acccaacacattttgctcattcccaactaaaattccaaaattatccctgtgtgagtt 16984393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 2847151 - 2847207
Alignment:
Q  306 gaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaata 362  Q
    ||||||||||||||||| ||||  ||||||||||||| ||||||||||| |||||||    
T  2847151 gaattctgctctttacctaacatgttttgctcattcccaactgaaattctaaaaata 2847207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 336
Target Start/End: Original strand, 145674 - 145708
Alignment:
Q  302 caaagaattctgctctttacccaacacattttgct 336  Q
    ||||||||||||||||||||||||||| |||||||    
T  145674 caaagaattctgctctttacccaacactttttgct 145708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 461
Target Start/End: Original strand, 2847264 - 2847326
Alignment:
Q  399 ggggaattatagttatttcagttaagaatgagcattttttgttggataaagagcagaattctt 461  Q
    |||| |||||||| |||||||||  |||| | |||||||||| || |||||||||||||||||    
T  2847264 ggggcattatagtcatttcagttgggaataaacattttttgtagggtaaagagcagaattctt 2847326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 340
Target Start/End: Original strand, 28065608 - 28065641
Alignment:
Q  307 aattctgctctttacccaacacattttgctcatt 340  Q
    ||||||||||||||||||||||||||| ||||||    
T  28065608 aattctgctctttacccaacacattttactcatt 28065641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 37586581 - 37586524
Alignment:
Q  308 attctgctctttacccaacacattttgctcattccaaactgaaattccaaaaatatcc 365  Q
    ||||||||||||| |||||| |  ||||||  ||| ||||||||||||||||||||||    
T  37586581 attctgctctttatccaacagaaattgctcgctcccaactgaaattccaaaaatatcc 37586524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 11827948 - 11827916
Alignment:
Q  305 agaattctgctctttacccaacacattttgctc 337  Q
    |||||||||||||||||||||||| ||||||||    
T  11827948 agaattctgctctttacccaacactttttgctc 11827916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 306 - 367
Target Start/End: Complemental strand, 34608836 - 34608775
Alignment:
Q  306 gaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaatatccct 367  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  34608836 gaattttgctctttacccaacacattttgcttattcccaactgaaattccaaaaatatccct 34608775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 25770464 - 25770409
Alignment:
Q  306 gaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaat 361  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||| ||||||    
T  25770464 gaattctgctctttacccaacacattttgctcattttcaactgaaattctaaaaat 25770409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 25780959 - 25780903
Alignment:
Q  306 gaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaata 362  Q
    ||||| |||| |||||||||||||||||||||||| | |||||||||| ||||||||    
T  25780959 gaattgtgctatttacccaacacattttgctcatttccaactgaaatttcaaaaata 25780903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 26170176 - 26170232
Alignment:
Q  306 gaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaata 362  Q
    |||||||||||||||| ||||||| |||||||   || |||||||||||||||||||    
T  26170176 gaattctgctctttactcaacacaatttgctcgcgcccaactgaaattccaaaaata 26170232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 459
Target Start/End: Original strand, 26227813 - 26227873
Alignment:
Q  399 ggggaattatagttatttcagttaagaatgagcattttttgttggataaagagcagaattc 459  Q
    |||| ||||||||  ||||||||  |||||||||||||||||||| |||||||||| ||||    
T  26227813 ggggtattatagtattttcagttcggaatgagcattttttgttgggtaaagagcaggattc 26227873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 453
Target Start/End: Original strand, 41101315 - 41101370
Alignment:
Q  399 ggggaattatagttatttcagttaag-aatgagcattttttgttggataaagagca 453  Q
    |||| |||||||| |||||||||  | |||||||||||||||||||||||||||||    
T  41101315 ggggcattatagtcatttcagttggggaatgagcattttttgttggataaagagca 41101370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 41101147 - 41101203
Alignment:
Q  306 gaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaata 362  Q
    ||||| |||| ||||||||||||||||||||| || | || |||||||| |||||||    
T  41101147 gaattatgctatttacccaacacattttgctcgtttccaattgaaattctaaaaata 41101203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 15892033 - 15892092
Alignment:
Q  303 aaagaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaata 362  Q
    |||||||| || ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  15892033 aaagaattatgttctttacccaacacattatgctcattcccaactgaaattccaaaaata 15892092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 32158765 - 32158709
Alignment:
Q  306 gaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaata 362  Q
    |||||| |||||||||||||||||||||||||||| | ||| |||||||||||||||    
T  32158765 gaattccgctctttacccaacacattttgctcattgccaaccgaaattccaaaaata 32158709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 459
Target Start/End: Original strand, 33609438 - 33609493
Alignment:
Q  404 attatagttatttcagttaagaatgagcattttttgttggataaagagcagaattc 459  Q
    |||||||| ||||||||| ||||||||||||||| ||||| |||||| || |||||    
T  33609438 attatagtcatttcagttgagaatgagcatttttggttgggtaaagaccaaaattc 33609493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 461
Target Start/End: Complemental strand, 32158679 - 32158622
Alignment:
Q  404 attatagttatttcagttaagaatgagcattttttgttggataaagagcagaattctt 461  Q
    |||||||| |||| ||||  |||||||||||||| ||||| ||||||||| |||||||    
T  32158679 attatagtcattttagttgggaatgagcatttttggttgggtaaagagcataattctt 32158622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 461
Target Start/End: Complemental strand, 40520100 - 40520067
Alignment:
Q  428 gagcattttttgttggataaagagcagaattctt 461  Q
    ||||| ||||||||||||||||||||||||||||    
T  40520100 gagcaatttttgttggataaagagcagaattctt 40520067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 32035747 - 32035783
Alignment:
Q  305 agaattctgctctttacccaacacattttgctcattc 341  Q
    |||||||||||||||| |||||| |||||||||||||    
T  32035747 agaattctgctctttatccaacatattttgctcattc 32035783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 306 - 367
Target Start/End: Complemental strand, 5270203 - 5270142
Alignment:
Q  306 gaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaatatccct 367  Q
    ||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||    
T  5270203 gaattttgctctttacccaacacattttgttcatttccaactgaaattccaaaaatacccct 5270142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 2093689 - 2093635
Alignment:
Q  305 agaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaa 359  Q
    ||||||||||||||||||||||||| |||  ||||||| ||||||| ||||||||    
T  2093689 agaattctgctctttacccaacacaatttaatcattcccaactgaagttccaaaa 2093635  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 47542948 - 47542989
Alignment:
Q  306 gaattctgctctttacccaacacattttgctcattccaaact 347  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  47542948 gaattctgctctttccccaacacattttgctcattcccaact 47542989  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 415 - 459
Target Start/End: Original strand, 10884523 - 10884567
Alignment:
Q  415 ttcagttaagaatgagcattttttgttggataaagagcagaattc 459  Q
    ||||||| |||||||||| ||||| |||| |||||||||||||||    
T  10884523 ttcagttgagaatgagcaattttttttgggtaaagagcagaattc 10884567  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 24359251 - 24359195
Alignment:
Q  305 agaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaat 361  Q
    ||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||    
T  24359251 agaattctgctctttacccaacacatttttctcattttcaactgaaattccaaaaat 24359195  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 3442851 - 3442804
Alignment:
Q  315 tctttacccaacacattttgctcattccaaactgaaattccaaaaatat 363  Q
    |||||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  3442851 tctttacccaacacatttcgctcattcc-aactgaaattctaaaaatat 3442804  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 2038318 - 2038371
Alignment:
Q  306 gaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaa 359  Q
    ||||||||||||||||| |||| ||||| || ||||  ||||||||||||||||    
T  2038318 gaattctgctctttaccaaacatattttactaattctcaactgaaattccaaaa 2038371  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 10378723 - 10378771
Alignment:
Q  314 ctctttacccaacacattttgctcattccaaactgaaattccaaaaata 362  Q
    ||||||| ||||||||||||||||||||  || ||||||| ||||||||    
T  10378723 ctctttatccaacacattttgctcattcacaattgaaatttcaaaaata 10378771  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 14469142 - 14469190
Alignment:
Q  304 aagaattctgctctttacccaacacattttgctcattccaaactgaaat 352  Q
    ||||||||||||||||||| ||||  ||||||||||| | |||||||||    
T  14469142 aagaattctgctctttacctaacagtttttgctcatttccaactgaaat 14469190  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 35018853 - 35018821
Alignment:
Q  305 agaattctgctctttacccaacacattttgctc 337  Q
    |||||||||||||| ||||||||||||||||||    
T  35018853 agaattctgctcttcacccaacacattttgctc 35018821  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 22858593 - 22858539
Alignment:
Q  305 agaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaa 359  Q
    |||||| ||||||||||||||||| ||||| ||||||| ||||||||| ||||||    
T  22858593 agaattatgctctttacccaacacgttttgttcattcccaactgaaatcccaaaa 22858539  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 2598536 - 2598568
Alignment:
Q  303 aaagaattctgctctttacccaacacattttgc 335  Q
    |||||||||||||||||||||||||||||||||    
T  2598536 aaagaattctgctctttacccaacacattttgc 2598568  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 44893667 - 44893611
Alignment:
Q  306 gaattctgctctttacccaacacattttgctcattccaaactgaaattccaaaaata 362  Q
    ||||||||||||||||  || | |||||||||||||| |||||||||| ||||||||    
T  44893667 gaattctgctctttacataatatattttgctcattcccaactgaaatttcaaaaata 44893611  T

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