View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14307_high_31 (Length: 446)

Name: NF14307_high_31
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14307_high_31
NF14307_high_31
[»] chr5 (18 HSPs)
chr5 (176-366)||(16597504-16597691)
chr5 (18-77)||(19065503-19065562)
chr5 (18-76)||(4765559-4765617)
chr5 (18-76)||(12970529-12970587)
chr5 (18-79)||(28602569-28602630)
chr5 (18-78)||(22935909-22935969)
chr5 (18-76)||(555705-555763)
chr5 (18-73)||(32535951-32536006)
chr5 (18-76)||(14206820-14206878)
chr5 (18-76)||(18412223-18412281)
chr5 (18-76)||(29543014-29543072)
chr5 (25-68)||(6091736-6091779)
chr5 (18-68)||(11855662-11855712)
chr5 (18-76)||(27481371-27481429)
chr5 (18-75)||(36703888-36703945)
chr5 (18-54)||(8646412-8646448)
chr5 (18-68)||(8406908-8406958)
chr5 (24-78)||(42012176-42012230)
[»] chr1 (31 HSPs)
chr1 (177-368)||(35306584-35306771)
chr1 (18-78)||(2430511-2430571)
chr1 (18-76)||(3572564-3572622)
chr1 (18-78)||(1597339-1597399)
chr1 (18-78)||(6978785-6978845)
chr1 (18-78)||(39329623-39329683)
chr1 (18-78)||(52630788-52630848)
chr1 (18-77)||(9115852-9115911)
chr1 (18-76)||(2632867-2632925)
chr1 (18-76)||(4683373-4683431)
chr1 (18-76)||(5806290-5806348)
chr1 (18-76)||(32202330-32202388)
chr1 (18-68)||(36361797-36361847)
chr1 (18-76)||(46666723-46666781)
chr1 (18-75)||(39930472-39930529)
chr1 (18-78)||(8332029-8332089)
chr1 (18-74)||(25789778-25789834)
chr1 (24-76)||(47037478-47037530)
chr1 (18-73)||(32824937-32824992)
chr1 (18-76)||(6911508-6911566)
chr1 (18-76)||(12190176-12190234)
chr1 (18-76)||(35187471-35187529)
chr1 (18-68)||(38964686-38964736)
chr1 (18-76)||(49822916-49822974)
chr1 (18-75)||(14788738-14788795)
chr1 (18-75)||(20260086-20260143)
chr1 (18-73)||(9831872-9831927)
chr1 (25-68)||(51445087-51445130)
chr1 (24-76)||(5518503-5518555)
chr1 (20-75)||(1007764-1007819)
chr1 (18-73)||(50190767-50190822)
[»] chr8 (23 HSPs)
chr8 (18-78)||(37392543-37392603)
chr8 (18-78)||(25837925-25837985)
chr8 (18-76)||(1554353-1554411)
chr8 (18-75)||(18726619-18726676)
chr8 (18-78)||(12710659-12710719)
chr8 (18-78)||(16313504-16313564)
chr8 (18-78)||(35818421-35818481)
chr8 (18-78)||(38364095-38364155)
chr8 (18-68)||(3050023-3050073)
chr8 (18-76)||(32660932-32660990)
chr8 (18-68)||(40197083-40197133)
chr8 (18-78)||(38132734-38132794)
chr8 (18-77)||(41228712-41228771)
chr8 (18-76)||(26062158-26062216)
chr8 (18-68)||(26601945-26601995)
chr8 (18-75)||(10896217-10896274)
chr8 (18-74)||(42755881-42755937)
chr8 (18-68)||(7931253-7931303)
chr8 (18-68)||(18298126-18298176)
chr8 (77-149)||(40530483-40530556)
chr8 (20-69)||(41432756-41432805)
chr8 (22-78)||(5020487-5020543)
chr8 (20-76)||(7317389-7317445)
[»] chr7 (29 HSPs)
chr7 (18-77)||(45045640-45045699)
chr7 (18-75)||(38544208-38544265)
chr7 (18-78)||(9814215-9814275)
chr7 (18-78)||(33378856-33378916)
chr7 (18-78)||(48314136-48314196)
chr7 (18-77)||(48160589-48160648)
chr7 (18-75)||(44566059-44566116)
chr7 (18-78)||(9946987-9947047)
chr7 (18-78)||(11330007-11330067)
chr7 (18-78)||(27248307-27248367)
chr7 (18-78)||(28904183-28904243)
chr7 (18-76)||(8419588-8419646)
chr7 (18-76)||(27213854-27213912)
chr7 (18-76)||(39554197-39554255)
chr7 (18-68)||(48341376-48341426)
chr7 (18-75)||(40212903-40212960)
chr7 (18-74)||(43949259-43949315)
chr7 (18-77)||(35488187-35488246)
chr7 (18-68)||(25924644-25924694)
chr7 (18-76)||(27419223-27419281)
chr7 (18-60)||(38396381-38396423)
chr7 (18-74)||(45265049-45265105)
chr7 (18-76)||(25098083-25098141)
chr7 (18-68)||(45448956-45449006)
chr7 (20-74)||(45723223-45723277)
chr7 (25-78)||(11000724-11000777)
chr7 (18-78)||(16825351-16825411)
chr7 (18-74)||(41632365-41632421)
chr7 (18-60)||(34930481-34930523)
[»] chr3 (21 HSPs)
chr3 (177-255)||(35231749-35231827)
chr3 (18-78)||(20297807-20297867)
chr3 (18-78)||(40908279-40908339)
chr3 (18-76)||(24574589-24574647)
chr3 (18-76)||(26849036-26849094)
chr3 (18-75)||(9320448-9320505)
chr3 (18-78)||(11239117-11239177)
chr3 (18-78)||(43715305-43715365)
chr3 (18-73)||(1099212-1099267)
chr3 (18-77)||(44952322-44952381)
chr3 (18-76)||(8476307-8476365)
chr3 (18-75)||(6231501-6231558)
chr3 (18-75)||(28124436-28124493)
chr3 (18-68)||(33217920-33217970)
chr3 (18-75)||(47114857-47114914)
chr3 (18-76)||(20414464-20414522)
chr3 (25-78)||(48339754-48339807)
chr3 (18-78)||(31435920-31435980)
chr3 (20-67)||(53165733-53165780)
chr3 (18-56)||(31611004-31611042)
chr3 (20-77)||(55435390-55435447)
[»] chr4 (33 HSPs)
chr4 (18-75)||(34049597-34049654)
chr4 (18-78)||(39498843-39498903)
chr4 (18-78)||(39502182-39502242)
chr4 (18-77)||(45747794-45747853)
chr4 (18-68)||(27942761-27942811)
chr4 (18-78)||(27555428-27555488)
chr4 (18-78)||(39730290-39730350)
chr4 (18-78)||(43723282-43723342)
chr4 (18-77)||(55967998-55968057)
chr4 (18-76)||(6279920-6279978)
chr4 (18-76)||(25916034-25916092)
chr4 (18-76)||(40435918-40435976)
chr4 (18-76)||(48879343-48879401)
chr4 (18-75)||(27762899-27762956)
chr4 (18-75)||(48518891-48518948)
chr4 (18-82)||(18931771-18931835)
chr4 (24-76)||(23686811-23686863)
chr4 (18-78)||(41859044-41859104)
chr4 (18-74)||(47670380-47670436)
chr4 (25-76)||(39835306-39835357)
chr4 (20-78)||(936146-936204)
chr4 (18-68)||(34237427-34237477)
chr4 (18-76)||(35999704-35999762)
chr4 (18-78)||(18405231-18405291)
chr4 (18-78)||(25932459-25932519)
chr4 (20-76)||(30415922-30415978)
chr4 (18-78)||(42773966-42774026)
chr4 (18-75)||(13229989-13230046)
chr4 (18-75)||(32953541-32953598)
chr4 (18-78)||(45596286-45596346)
chr4 (18-73)||(41744222-41744277)
chr4 (18-76)||(50672907-50672962)
chr4 (18-60)||(8322263-8322305)
[»] scaffold0006 (1 HSPs)
scaffold0006 (18-78)||(201939-201999)
[»] chr2 (30 HSPs)
chr2 (18-78)||(21737397-21737457)
chr2 (18-76)||(346344-346402)
chr2 (18-76)||(39995130-39995188)
chr2 (20-76)||(6571703-6571759)
chr2 (18-78)||(34356697-34356757)
chr2 (18-78)||(42674658-42674718)
chr2 (18-68)||(638607-638657)
chr2 (18-76)||(2521689-2521747)
chr2 (18-76)||(6171805-6171863)
chr2 (18-76)||(11071619-11071677)
chr2 (18-76)||(37533966-37534024)
chr2 (18-75)||(9733846-9733903)
chr2 (18-78)||(17965997-17966057)
chr2 (18-73)||(2050880-2050935)
chr2 (18-73)||(37192536-37192591)
chr2 (24-79)||(40950855-40950910)
chr2 (18-68)||(5770117-5770167)
chr2 (18-76)||(14777497-14777555)
chr2 (18-68)||(26310283-26310333)
chr2 (19-77)||(41729128-41729186)
chr2 (20-77)||(20426481-20426538)
chr2 (18-78)||(4559573-4559633)
chr2 (20-68)||(28311704-28311752)
chr2 (21-68)||(37233446-37233493)
chr2 (18-74)||(41750543-41750599)
chr2 (25-76)||(14403232-14403283)
chr2 (18-76)||(27357962-27358020)
chr2 (18-76)||(45409264-45409322)
chr2 (81-149)||(32453229-32453298)
chr2 (20-68)||(13760961-13761009)
[»] chr6 (8 HSPs)
chr6 (18-76)||(2657714-2657772)
chr6 (18-76)||(7053569-7053627)
chr6 (18-76)||(8029347-8029405)
chr6 (20-78)||(14171029-14171087)
chr6 (18-75)||(1317032-1317089)
chr6 (18-68)||(18897935-18897985)
chr6 (20-72)||(16968941-16968993)
chr6 (39-75)||(10246222-10246258)
[»] scaffold0189 (1 HSPs)
scaffold0189 (18-68)||(28959-29009)


Alignment Details
Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 176 - 366
Target Start/End: Complemental strand, 16597691 - 16597504
Alignment:
Q  176 aggaggtatgcaatgaaatggaaccactcaattccattattactcttttacgcctattttattacttcatcaatgtactgttgattc-ctttcttttgct 274  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||||  | | |||||||||||||||| |||||   |||||| | | |||  |||    
T  16597691 aggaggtatgcaatggaatggaaccacttaattctattattactcttttatcctttttttattacttcatcactgtac---tgattctcctgcttccgct 16597595  T
Q  275 caagtgttacgttgtgcacatatttcttcttgttccgtttttatgtttgttgtttgtaaatctcagatgattgtttcatttcaaccaatttt 366  Q
    | ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |   |||||| | ||||||| |||||| ||||||||||    
T  16597594 ctagtgttacgctgtgcacatatttcttcttgttcagtttttatgtttgttgtcttgcaatctc-gttgattgtatcatttaaaccaatttt 16597504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 19065562 - 19065503
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 77  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  19065562 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 19065503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 4765617 - 4765559
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  4765617 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 4765559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 12970587 - 12970529
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  12970587 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 12970529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 28602569 - 28602630
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaat 79  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  28602569 acattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaat 28602630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 22935969 - 22935909
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  22935969 acattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 22935909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 555763 - 555705
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  555763 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 555705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 32535951 - 32536006
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 73  Q
    ||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  32535951 acatttctatcattttattcctgggaatcaacaattataacttaaaacaaacacac 32536006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 14206878 - 14206820
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| ||||||||||||| |||| |||||||||||||||||| ||||||| |||||||    
T  14206878 acatttctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 14206820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 18412223 - 18412281
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| || |||||||| ||||||||||| ||||||| |||||||    
T  18412223 acattcctatcattttattcccaggaatcaataattataacttgaaacaaacacaccct 18412281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 29543072 - 29543014
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||| ||||||||||| || |||||||||||||||||||| ||||||| |||||||    
T  29543072 acattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccct 29543014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 6091736 - 6091779
Alignment:
Q  25 tatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    |||||||||||| ||||||||||||||||||||||| |||||||    
T  6091736 tatcattttattcccgggaatcaacaattataacttgaaacaaa 6091779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 11855712 - 11855662
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    |||||||||||||||||||  | |||||||||||||||||||| |||||||    
T  11855712 acattcctatcattttattctcaggaatcaacaattataacttgaaacaaa 11855662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 27481371 - 27481429
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||||||   |||||| ||||||||||| ||||||| |||||||    
T  27481371 acattcctatcattttatttccaaaaatcaaaaattataacttgaaacaaacacaccct 27481429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 36703888 - 36703945
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||| ||||||||||||| |||  |||||||||||||||||| ||||||| ||||||    
T  36703888 acatttctatcattttattcccgataatcaacaattataacttgaaacaaacacaccc 36703945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 8646448 - 8646412
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaatta 54  Q
    ||||||||||||||||||| |||||||||||||||||    
T  8646448 acattcctatcattttattcccgggaatcaacaatta 8646412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 8406908 - 8406958
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    |||||||||||||||||||  ||  |||||||||||||||||| |||||||    
T  8406908 acattcctatcattttattctcgaaaatcaacaattataacttgaaacaaa 8406958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 42012230 - 42012176
Alignment:
Q  24 ctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||| ||| |||||||||| |||| ||| ||||||| |||||||||    
T  42012230 ctatcattttattcccgagaatcaacaaatatagcttcaaacaaacacaccctaa 42012176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 368
Target Start/End: Complemental strand, 35306771 - 35306584
Alignment:
Q  177 ggaggtatgcaatgaaatggaaccactcaattccattattactcttttacgcctattttattacttcatcaatgtactgttgattcctttcttttgctca 276  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||||||  |||||||||||||||||||| ||||||| | ||||  | ||| ||||      
T  35306771 ggaggtatgcaatggaatggaaccacttaattctattattactcttttatccctattttattacttcatcactgtactgattattc--tgcttctgct-t 35306675  T
Q  277 agtgttacgttgtgcacatatttcttcttgttccgtttttatgtttgttgtttgtaaatctcagatgattgtttcatttcaaccaattttat 368  Q
    ||||||| | ||||| | ||||||||||| ||| ||||||||||||||||| |   |||||||  ||||| |  ||||||||||||||||||    
T  35306674 agtgttatgctgtgctcgtatttcttctttttcagtttttatgtttgttgtcttacaatctca-ttgattataccatttcaaccaattttat 35306584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 2430511 - 2430571
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  2430511 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 2430571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 3572622 - 3572564
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  3572622 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 3572564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 1597399 - 1597339
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||||    
T  1597399 acattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaa 1597339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 6978785 - 6978845
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  6978785 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 6978845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 39329623 - 39329683
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  39329623 acattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 39329683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 52630788 - 52630848
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||||||| |||||||||    
T  52630788 acattcctatcattttattcccaggaatcaacaattataacttgaaacaaacacaccctaa 52630848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 9115852 - 9115911
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 77  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  9115852 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 9115911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 2632867 - 2632925
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    |||||||||| |||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  2632867 acattcctattattttattcccgggaatcaacaattataacttgaaacaaacacaccct 2632925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 4683431 - 4683373
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||    
T  4683431 acattcctatcattttatttctgggaatcaacaattataaattgaaacaaagacaccct 4683373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 5806348 - 5806290
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  5806348 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 5806290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 32202388 - 32202330
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||    
T  32202388 acatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccct 32202330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 36361797 - 36361847
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  36361797 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaa 36361847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 46666723 - 46666781
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  46666723 acattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 46666781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 39930472 - 39930529
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  39930472 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 39930529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 8332029 - 8332089
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||| ||||||||||| |||| |||||||||||||||||| ||||||| |||||||||    
T  8332029 acattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaa 8332089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 25789778 - 25789834
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 74  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  25789778 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 25789834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 47037478 - 47037530
Alignment:
Q  24 ctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  47037478 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 47037530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 32824937 - 32824992
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 73  Q
    |||||||||| ||||||||||||| |||||||||||||||||| ||||||| ||||    
T  32824937 acattcctattattttatttccggaaatcaacaattataacttgaaacaaacacac 32824992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 6911508 - 6911566
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    |||||| |||||||||||| ||| ||||||||||||||||||| ||||||| |||||||    
T  6911508 acattcttatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 6911566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 12190234 - 12190176
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| |||  |||||||||||||||||| ||||||| |||||||    
T  12190234 acattcctatcattttattcccgaaaatcaacaattataacttgaaacaaacacaccct 12190176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 35187471 - 35187529
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||| ||| |||||||    
T  35187471 acatttctatcattttattcccgggaatcaacaattataacttgaaaaaaacacaccct 35187529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 38964736 - 38964686
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| |||||||    
T  38964736 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaa 38964686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 49822974 - 49822916
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||    
T  49822974 acatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 49822916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 14788738 - 14788795
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    |||||||||| |||||||| ||||||||||| ||||||||||| ||||||| ||||||    
T  14788738 acattcctattattttattcccgggaatcaaaaattataacttgaaacaaacacaccc 14788795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 20260143 - 20260086
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||||| ||||||||||| || |||||||||||||||||||| ||||||| ||||||    
T  20260143 acattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccc 20260086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 9831927 - 9831872
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 73  Q
    ||||| ||||||||||||| | ||||||||||||||||||||| ||||||| ||||    
T  9831927 acatttctatcattttattcctgggaatcaacaattataacttgaaacaaacacac 9831872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 51445130 - 51445087
Alignment:
Q  25 tatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    |||||||||||| ||||||||||||||||||||||| |||||||    
T  51445130 tatcattttattcccgggaatcaacaattataacttgaaacaaa 51445087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 5518555 - 5518503
Alignment:
Q  24 ctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||| | |||||||||||| |||||||| ||||||| |||||||    
T  5518555 ctatcattttattcctgggaatcaacaaatataacttgaaacaaacacaccct 5518503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 1007764 - 1007819
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    |||| ||||||||||||  ||||||||||||| |||||||| ||||||| ||||||    
T  1007764 attcatatcattttattctcgggaatcaacaaatataacttgaaacaaacacaccc 1007819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 50190822 - 50190767
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 73  Q
    ||||||||| |||||||||||||| ||| |||||||||| ||| ||||||| ||||    
T  50190822 acattcctagcattttatttccggaaattaacaattatatcttgaaacaaacacac 50190767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 37392603 - 37392543
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  37392603 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaatacaccctaa 37392543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 25837925 - 25837985
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  25837925 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 25837985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 1554411 - 1554353
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  1554411 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 1554353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 18726676 - 18726619
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  18726676 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 18726619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 12710659 - 12710719
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  12710659 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 12710719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 16313564 - 16313504
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||||    
T  16313564 acattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaa 16313504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 35818481 - 35818421
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  35818481 acattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 35818421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 38364095 - 38364155
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  38364095 acattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 38364155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 3050023 - 3050073
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  3050023 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaa 3050073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 32660990 - 32660932
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||||||| |||||||    
T  32660990 acattcctatcattttattcccaggaatcaacaattataacttgaaacaaacacaccct 32660932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 40197133 - 40197083
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  40197133 acatttctatcattttatttccgggaatcaacaattataacttgaaacaaa 40197083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 38132794 - 38132734
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||    
T  38132794 acatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaa 38132734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 41228771 - 41228712
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 77  Q
    ||||||||| ||||||||| |||||||| |||||||||||||| ||||||| ||||||||    
T  41228771 acattcctaccattttattcccgggaattaacaattataacttgaaacaaacacacccta 41228712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 26062158 - 26062216
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||    
T  26062158 acatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 26062216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 26601995 - 26601945
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||||||||||||||||| |||||||||||||||||||| || |||||||    
T  26601995 acattcctatcattttattcccgggaatcaacaattataatttgaaacaaa 26601945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 10896274 - 10896217
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||| ||||||||||||| | ||||||||||||||||||||| ||||||| ||||||    
T  10896274 acatttctatcattttattcctgggaatcaacaattataacttgaaacaaacacaccc 10896217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 42755881 - 42755937
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 74  Q
    ||||| ||||||||||||| || |||||||||||||||||||| ||||||| |||||    
T  42755881 acatttctatcattttattcccaggaatcaacaattataacttgaaacaaacacacc 42755937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 7931253 - 7931303
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||| ||||||||||||| || |||||||||||||||||||| |||||||    
T  7931253 acatttctatcattttattcccaggaatcaacaattataacttgaaacaaa 7931303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 18298126 - 18298176
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||||||||||||||||| ||| ||||||| ||||||||||| |||||||    
T  18298126 acattcctatcattttattcccgagaatcaaaaattataacttgaaacaaa 18298176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 40530556 - 40530483
Alignment:
Q  77 aatgttatataacattgaccaataaagatgtgtcatgtaagaaggtct-aagagaaaagagaaaatatatgcat 149  Q
    ||||||||||||||||||| ||| ||| |||| ||| || |||||||| |||| ||||||||||| ||||||||    
T  40530556 aatgttatataacattgactaatgaaggtgtgccatataggaaggtctaaagaaaaaagagaaaagatatgcat 40530483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 41432756 - 41432805
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaaat 69  Q
    ||||||||||||||||| || |||||| || | |||||||||||||||||    
T  41432756 attcctatcattttattcccaggaatccacgaatataacttaaaacaaat 41432805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 5020543 - 5020487
Alignment:
Q  22 tcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||| ||  |||||||||| |||||||| ||||||| |||| ||||    
T  5020543 tcctatcattttattcccatgaatcaacaaatataacttgaaacaaacacactctaa 5020487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 7317389 - 7317445
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||  |  ||||||||| |||||||| ||||||| |||||||    
T  7317389 attcctatcattttatttttgaaaatcaacaaatataacttgaaacaaacacaccct 7317445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 45045640 - 45045699
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 77  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  45045640 acattcctatcattttattcccgggaatcaacaattataacttaaaacaaacacacccta 45045699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 38544208 - 38544265
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  38544208 acattcctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccc 38544265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 9814275 - 9814215
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  9814275 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 9814215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 33378856 - 33378916
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  33378856 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 33378916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 48314136 - 48314196
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  48314136 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 48314196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 48160648 - 48160589
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 77  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  48160648 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 48160589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 44566059 - 44566116
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  44566059 acattcctatcattttatttccggaaatcaacaattataacttgaaacaaacacaccc 44566116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 9947047 - 9946987
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||    
T  9947047 acattcctatcattttattcccgggaatcaaaaattataactttaaacaaacacaccctaa 9946987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 11330007 - 11330067
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  11330007 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 11330067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 27248307 - 27248367
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  27248307 acattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 27248367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 28904243 - 28904183
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  28904243 acatttctatcattttattctcgggaatcaacaattataacttaaaacaaacacaccctaa 28904183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 8419646 - 8419588
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  8419646 acattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8419588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 27213912 - 27213854
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  27213912 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 27213854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 39554197 - 39554255
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  39554197 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39554255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 48341376 - 48341426
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  48341376 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaa 48341426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 40212903 - 40212960
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||    
T  40212903 acattcctatcattttattcccgcgaatcaacaattataacttgaaacaaacacaccc 40212960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 43949259 - 43949315
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 74  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  43949259 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 43949315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 35488246 - 35488187
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 77  Q
    ||||||| ||||||||||| |||| |||||||||||||||||| ||||||| ||||||||    
T  35488246 acattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacacccta 35488187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 25924694 - 25924644
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| |||||||    
T  25924694 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaa 25924644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 27419281 - 27419223
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| ||||||||||||| |||||||||| |||||||||||| ||||||| |||||||    
T  27419281 acatttctatcattttattcccgggaatcagcaattataacttgaaacaaacacaccct 27419223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 38396423 - 38396381
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataactt 60  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  38396423 acattcctatcattttattcccgggaatcaacaattataactt 38396381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 45265105 - 45265049
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 74  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||| ||||||| |||||    
T  45265105 acattccaatcattttattcccgagaatcaacaattataacttgaaacaaacacacc 45265049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 25098083 - 25098141
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| |||  |||||| ||||||||||| ||||||| |||||||    
T  25098083 acattcctatcattttattcccgaaaatcaaaaattataacttgaaacaaacacaccct 25098141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 45448956 - 45449006
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||||||||||||||||| ||| ||||||| ||||||||||| |||||||    
T  45448956 acattcctatcattttattcccgagaatcaaaaattataacttgaaacaaa 45449006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 45723223 - 45723277
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 74  Q
    |||||||||||||||||  ||||||||||||| |||||||| ||||||| |||||    
T  45723223 attcctatcattttattctcgggaatcaacaaatataacttgaaacaaacacacc 45723277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 11000724 - 11000777
Alignment:
Q  25 tatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||| ||||||||||  |||||||| ||||||| |||||||||    
T  11000724 tatcattttatttccaggaatcaacatatataacttgaaacaaacacaccctaa 11000777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 16825411 - 16825351
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| ||||||||||||| |  ||||| |||||||||||||| ||||||| |||||||||    
T  16825411 acatttctatcattttattcctaggaattaacaattataacttgaaacaaacacaccctaa 16825351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 41632421 - 41632365
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 74  Q
    ||||| |||||||||||||  | |||||||||||||||||||| ||||||| |||||    
T  41632421 acatttctatcattttattctcaggaatcaacaattataacttgaaacaaacacacc 41632365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 34930523 - 34930481
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataactt 60  Q
    ||||| ||||||||||||| || ||||||||||||||||||||    
T  34930523 acatttctatcattttattcccaggaatcaacaattataactt 34930481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 35231827 - 35231749
Alignment:
Q  177 ggaggtatgcaatgaaatggaaccactcaattccattattactcttttacgcctattttattacttcatcaatgtactg 255  Q
    |||||||||||||| ||| |||||||| ||||| |||||||||||||||  |||||||||||||||||||| |||||||    
T  35231827 ggaggtatgcaatggaatagaaccacttaattctattattactcttttatccctattttattacttcatcactgtactg 35231749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 20297807 - 20297867
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  20297807 acatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 20297867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 40908279 - 40908339
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  40908279 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 40908339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 24574589 - 24574647
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  24574589 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 24574647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 26849036 - 26849094
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  26849036 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 26849094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 9320505 - 9320448
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  9320505 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 9320448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 11239177 - 11239117
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  11239177 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 11239117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 43715365 - 43715305
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||||    
T  43715365 acatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccctaa 43715305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 1099212 - 1099267
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 73  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  1099212 acatttctatcattttattcccgggaatcaacaattataacttaaaacaaacacac 1099267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 44952322 - 44952381
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 77  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  44952322 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 44952381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 8476365 - 8476307
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  8476365 acattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8476307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 6231558 - 6231501
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||||| ||||||    
T  6231558 acattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacaccc 6231501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 28124493 - 28124436
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||    
T  28124493 acattcctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccc 28124436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 33217970 - 33217920
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||||||    
T  33217970 acattcctatcattttattcccggaaatcaacaattataacttgaaacaaa 33217920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 47114914 - 47114857
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||||| ||||||||||| || |||||||||||||||||||| ||||||| ||||||    
T  47114914 acattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccc 47114857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 20414522 - 20414464
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||| ||||||||||| || | |||||||||||||||||| ||||||| |||||||    
T  20414522 acattccaatcattttattcccagaaatcaacaattataacttgaaacaaacacaccct 20414464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 48339807 - 48339754
Alignment:
Q  25 tatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    |||||||||||| |||| |||||||||||||||||| ||||||| ||| |||||    
T  48339807 tatcattttattcccggaaatcaacaattataacttgaaacaaacacatcctaa 48339754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 31435980 - 31435920
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| |||||||||||||  | ||||||||||| |||||||| ||||||| |||||||||    
T  31435980 acatttctatcattttattctcaggaatcaacaaatataacttgaaacaaacacaccctaa 31435920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 53165780 - 53165733
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaa 67  Q
    ||||||||||||||||||  |||||||||||| |||||||| ||||||    
T  53165780 attcctatcattttatttatgggaatcaacaaatataacttgaaacaa 53165733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 31611042 - 31611004
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattata 56  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  31611042 acattccaatcattttattcccgggaatcaacaattata 31611004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 55435447 - 55435390
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 77  Q
    ||||||||||||||||| || || ||| ||||  ||||||| ||||||||||||||||    
T  55435447 attcctatcattttattcccaggtatctacaaaaataacttgaaacaaatacacccta 55435390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 34049654 - 34049597
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  34049654 acattcctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccc 34049597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 39498843 - 39498903
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  39498843 acatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 39498903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 39502182 - 39502242
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  39502182 acatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 39502242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 45747853 - 45747794
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 77  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  45747853 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 45747794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 27942761 - 27942811
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27942761 acattcctatcattttatttccgggaatcaacaattataacttgaaacaaa 27942811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 27555428 - 27555488
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||    
T  27555428 acattcctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaa 27555488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 39730350 - 39730290
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||    
T  39730350 acattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccctaa 39730290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 43723282 - 43723342
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||||    
T  43723282 acatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccctaa 43723342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 55968057 - 55967998
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 77  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  55968057 acattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 55967998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 6279978 - 6279920
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    |||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  6279978 acattcatatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 6279920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 25916092 - 25916034
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||    
T  25916092 acattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccct 25916034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 40435918 - 40435976
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  40435918 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 40435976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 48879343 - 48879401
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  48879343 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 48879401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 27762956 - 27762899
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  27762956 acattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 27762899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 48518948 - 48518891
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||    
T  48518948 acattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccc 48518891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 18931771 - 18931835
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaatgtt 82  Q
    ||||||||||||||||||| || | |||||||||||||||||| ||||||| |||| ||||||||    
T  18931771 acattcctatcattttattcccagaaatcaacaattataacttgaaacaaacacactctaatgtt 18931835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 23686811 - 23686863
Alignment:
Q  24 ctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  23686811 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 23686863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 41859104 - 41859044
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||| ||||||||||| |||| |||||||||||||||||| ||||||| |||||||||    
T  41859104 acattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaa 41859044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 47670380 - 47670436
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 74  Q
    ||||| |||||||||||||||| |||||||||||||||||||| ||||||| |||||    
T  47670380 acatttctatcattttatttccaggaatcaacaattataacttgaaacaaacacacc 47670436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 39835357 - 39835306
Alignment:
Q  25 tatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    |||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  39835357 tatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39835306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 936146 - 936204
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| |||||||||||  |||||||||||||||||||||| ||||||| |||||||||    
T  936146 attccaatcattttattctcgggaatcaacaattataacttgaaacaaacacaccctaa 936204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 34237477 - 34237427
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| |||||||    
T  34237477 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaa 34237427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 35999704 - 35999762
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||    
T  35999704 acatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 35999762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 18405291 - 18405231
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| |||| ||||||||  |||||||||||||||||||||| ||||||| |||||||||    
T  18405291 acatttctataattttattctcgggaatcaacaattataacttgaaacaaacacaccctaa 18405231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 25932459 - 25932519
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| ||||||||||||| |  |||||||||||||||||||| ||||||| |||||||||    
T  25932459 acatttctatcattttattcctaggaatcaacaattataacttgaaacaaacacaccctaa 25932519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 30415922 - 30415978
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    |||||||||||||||||  ||||||||||||| |||||||| ||||||| |||||||    
T  30415922 attcctatcattttattatcgggaatcaacaaatataacttgaaacaaacacaccct 30415978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 42773966 - 42774026
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||| ||||||||||| || | |||||||||||||||||| ||||||| |||||||||    
T  42773966 acattccaatcattttattcccagaaatcaacaattataacttgaaacaaacacaccctaa 42774026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 13230046 - 13229989
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||| ||||||||||||| |||||||| || ||||||||||| ||||||| ||||||    
T  13230046 acatttctatcattttattcccgggaataaaaaattataacttgaaacaaacacaccc 13229989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 32953541 - 32953598
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    |||||||||||||||| || | ||||||||||||||||||||| | ||||| ||||||    
T  32953541 acattcctatcattttgttcctgggaatcaacaattataacttgagacaaacacaccc 32953598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 45596286 - 45596346
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| ||||||||||||| |||  |||||||||||||||||| |||||||  ||||||||    
T  45596286 acatttctatcattttattcccgaaaatcaacaattataacttgaaacaaacgcaccctaa 45596346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 41744277 - 41744222
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 73  Q
    ||||| ||||||||||||| |||| |||||||||||||||||| ||| ||| ||||    
T  41744277 acatttctatcattttattcccggaaatcaacaattataacttgaaataaacacac 41744222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 50672962 - 50672907
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||| |||| ||||||||||||  |||||||||||||| |||||||    
T  50672962 acattcctatcatttta-ttcccggaatcaacaat--taacttaaaacaaacacaccct 50672907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 8322263 - 8322305
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataactt 60  Q
    ||||| ||||||||||||| || ||||||||||||||||||||    
T  8322263 acatttctatcattttattcccaggaatcaacaattataactt 8322305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 201939 - 201999
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  201939 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 201999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 21737457 - 21737397
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  21737457 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 21737397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 346402 - 346344
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  346402 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 346344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 39995188 - 39995130
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  39995188 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39995130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 6571703 - 6571759
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  6571703 attcctatcattttatttccggaaatcaacaaatataactttaaacaaatacaccct 6571759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 34356757 - 34356697
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  34356757 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 34356697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 42674718 - 42674658
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  42674718 acattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 42674658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 638607 - 638657
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  638607 acattcctatcattttatttccggaaatcaacaattataacttgaaacaaa 638657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 2521689 - 2521747
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||| |||||||||||| |||||||||||||||||||||| ||||||| |||||||    
T  2521689 acattccaatcattttattttcgggaatcaacaattataacttgaaacaaacacaccct 2521747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 6171805 - 6171863
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||||| |||||||    
T  6171805 acattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacaccct 6171863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 11071619 - 11071677
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||    
T  11071619 acattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 11071677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 37533966 - 37534024
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||    
T  37533966 acattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 37534024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 9733903 - 9733846
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  9733903 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 9733846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 17965997 - 17966057
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||| |||||||||||  |||||||||||||||||||||| ||||||| |||||||||    
T  17965997 acattccaatcattttattatcgggaatcaacaattataacttgaaacaaacacaccctaa 17966057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 2050880 - 2050935
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 73  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||||| ||||    
T  2050880 acattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacac 2050935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 37192536 - 37192591
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 73  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||||    
T  37192536 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 37192591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 40950910 - 40950855
Alignment:
Q  24 ctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaat 79  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||    
T  40950910 ctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaat 40950855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 5770167 - 5770117
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||||||||||||||||| || |||||||||||||||||||| |||||||    
T  5770167 acattcctatcattttattcccaggaatcaacaattataacttgaaacaaa 5770117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 14777555 - 14777497
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||| ||||||||||| |||||||||||||||||||| || ||||||| |||||||    
T  14777555 acattccaatcattttattcccgggaatcaacaattataaattgaaacaaacacaccct 14777497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 26310283 - 26310333
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| |||||||    
T  26310283 acatttctatcattttattcccgggaatcaacaattataactttaaacaaa 26310333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 41729186 - 41729128
Alignment:
Q  19 cattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 77  Q
    |||||||||||||||||| |||||||| || ||||||||||| ||||||| ||||||||    
T  41729186 cattcctatcattttattcccgggaataaaaaattataacttgaaacaaacacacccta 41729128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 20426538 - 20426481
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 77  Q
    ||||||||||||||||| |||||||||||||| ||||| || ||||||| ||||||||    
T  20426538 attcctatcattttattcccgggaatcaacaaatataatttgaaacaaacacacccta 20426481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 4559573 - 4559633
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||| |||||||||||   ||||||||||||||||||||| ||||||| |||||||||    
T  4559573 acattccaatcattttattcttgggaatcaacaattataacttgaaacaaacacaccctaa 4559633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 28311752 - 28311704
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  28311752 attcctatcattttattcccgggaatcaacaaatataacttgaaacaaa 28311704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 37233446 - 37233493
Alignment:
Q  21 ttcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    |||||||||||||||| |||||||||||||| |||||||| |||||||    
T  37233446 ttcctatcattttattcccgggaatcaacaaatataacttgaaacaaa 37233493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 41750543 - 41750599
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 74  Q
    ||||| ||||||||||||| |  |||||||||||||||||||| ||||||| |||||    
T  41750543 acatttctatcattttattcctaggaatcaacaattataacttgaaacaaacacacc 41750599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14403283 - 14403232
Alignment:
Q  25 tatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||| ||||||||||| || ||||| ||||||| |||||||    
T  14403283 tatcattttatttccaggaatcaacaaatacaacttcaaacaaacacaccct 14403232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 27358020 - 27357962
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    |||| |||||||||||||  | |||||||||||| |||||||| ||||||| |||||||    
T  27358020 acatccctatcattttatacctgggaatcaacaaatataacttgaaacaaacacaccct 27357962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 45409264 - 45409322
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||    |||||||||||| |||||||| ||||||| |||||||    
T  45409264 acattcctatcattttatacttgggaatcaacaaatataacttgaaacaaacacaccct 45409322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 32453298 - 32453229
Alignment:
Q  81 ttatataacattgaccaataaagatgtgtcatgtaagaaggtct-aagagaaaagagaaaatatatgcat 149  Q
    ||||||||||||||||||| |||||||| ||  |||||| || | ||||||||||||| || ||||||||    
T  32453298 ttatataacattgaccaatgaagatgtgacacataagaatgtgtaaagagaaaagagataaaatatgcat 32453229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 13760961 - 13761009
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||||||||||||||| |||  |||||| ||||||||||| |||||||    
T  13760961 attcctatcattttattcccgaaaatcaataattataacttgaaacaaa 13761009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 2657714 - 2657772
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  2657714 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 2657772  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 7053627 - 7053569
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  7053627 acattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 7053569  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 8029347 - 8029405
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 76  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  8029347 acatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8029405  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 14171029 - 14171087
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 78  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||    
T  14171029 attcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccctaa 14171087  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 1317032 - 1317089
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  1317032 acattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 1317089  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 18897935 - 18897985
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||| |||||| |||||||||||||||||||||||||||||| |||||||    
T  18897935 acatttctatcactttatttccgggaatcaacaattataacttgaaacaaa 18897985  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 16968941 - 16968993
Alignment:
Q  20 attcctatcattttatttccgggaatcaacaattataacttaaaacaaataca 72  Q
    |||||||||||||||||  | |||||||||||||||||||| |||||||||||    
T  16968941 attcctatcattttattctcaggaatcaacaattataacttgaaacaaataca 16968993  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 10246258 - 10246222
Alignment:
Q  39 cgggaatcaacaattataacttaaaacaaatacaccc 75  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  10246258 cgggaatcaacaattataacttgaaacaaacacaccc 10246222  T

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Target: scaffold0189 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 29009 - 28959
Alignment:
Q  18 acattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 68  Q
    ||||||||||||||||||| |||  |||||||||||||||||| |||||||    
T  29009 acattcctatcattttattcccgaaaatcaacaattataacttgaaacaaa 28959  T

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