View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_high_33 (Length: 441)
Name: NF14307_high_33
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 427
Target Start/End: Complemental strand, 14395764 - 14395361
Alignment:
| Q |
13 |
aatatgacaatgattgtacaaataaattttaaagtgtgtgtaaatcattaagttttaggtttgatttgttcccaccagtttatgtaaatcggatgcaaat |
112 |
Q |
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| T |
14395764 |
aatatgacaatgattgtacaaataaattttaaagtacatgtagaacattaaattttcggtttgatttgtccccatcaagttatgtaaaccggatgcaaat |
14395665 |
T |
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| Q |
113 |
ggaaaaaccgaagaatctccttttaaatattttagaatccttacatgtaataatttggcggatttgaacgcaaccggtgctagtttatgttttgaatgta |
212 |
Q |
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| T |
14395664 |
agaaaaatcgaagaatctccttctaaatattttagaacccttacatgcaataatttggcggatttgaaagcaaccggtgctagtttatgttttgaatgta |
14395565 |
T |
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| Q |
213 |
atttgttttgaaaataaaatcaaaacgtcacggactacctcataatgaatactcaaaccattaaaccactgggccaaacaagtccttatgatgttaagag |
312 |
Q |
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| T |
14395564 |
atttgttttgaaaataaaatcaaaacgtcacggactacctcataatgaatactcaaatcattaaaccactaggccaaacaagtccttatgatgttaagag |
14395465 |
T |
|
| Q |
313 |
gttcttaattcttttaaatcatcgcaactttcaaaatatattttgcaaattgttccaacaagacctaaataaataaaagaatttgatcattgcgaatctt |
412 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14395464 |
gttcttaattcttttaaatcagcgcaactttcaaaatatattttgcaaattgttccaac-----------aaataaaagaatttgatcattgcgaatctt |
14395376 |
T |
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| Q |
413 |
acaaaactgcatgtc |
427 |
Q |
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| T |
14395375 |
acaaaactgcatgtc |
14395361 |
T |
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