View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14307_high_34 (Length: 440)
Name: NF14307_high_34
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 436
Target Start/End: Original strand, 1435891 - 1436325
Alignment:
| Q |
5 |
tcgtcagtctctctttccttatgggcagacaatcgtgcatattcttaaacatggctgtcatgtcttatgtcttgcttattgtgttttcatgggttaatga |
104 |
Q |
| |
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|||| ||||||||||| |||| ||| ||| || ||||||| |||||||||||| |||| || |||||||| | ||||||||||||||||| |||| || |
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| T |
1435891 |
tcgttagtctctctttacttaaggggagaaaaaagtgcataatcttaaacatggttgtcgagttttatgtctagtttattgtgttttcatggtttaaaga |
1435990 |
T |
|
| Q |
105 |
taagnnnnnnnn---gcagtttaggttggcttatgtttctcctgagtcaagggatgttggtgctggggatttagtcgaccatcccaagaaactagctgtt |
201 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1435991 |
taagtttttttttttgcagtttaggttggcttatgtttctcctgagtcaagggttgttggtgctggggatttagtcgaccatcccaagaaaatagctgtt |
1436090 |
T |
|
| Q |
202 |
aattactttaagagctactttttcttggacttatttgttgtatcacctattcctcaggtatatatcttcctatctctccatgttgtttgttgacaccgac |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1436091 |
aattactttaagagctactttttcttggacttatttgttgtatcacctattcctcaggtatatatcttcctatctctccatgttgtttgttgacaccgac |
1436190 |
T |
|
| Q |
302 |
acatgcgattaacattccaatactttctgtgcatgttacctcggtgtcacgttgatgccttaataaataatgtgtggaattgaacaagtgcttgatgata |
401 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1436191 |
acatgtgattaacatttcaatactttctgtgcatgttacctcggtgtcacgttgatgccttaataaataatgtgtggaattgaacaagtgcttgacgata |
1436290 |
T |
|
| Q |
402 |
tgtagttgacacagaagaaaagggatttcaatctg |
436 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |
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| T |
1436291 |
tgtagttgacacagaagaaaagggattttaatctg |
1436325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 117 - 299
Target Start/End: Original strand, 28087362 - 28087544
Alignment:
| Q |
117 |
gcagtttaggttggcttatgtttctcctgagtcaagggatgttggtgctggggatttagtcgaccatcccaagaaactagctgttaattactttaagagc |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
28087362 |
gcagtttaggttggcttatgtttctcctgagtcaagggttgttggtgctggggatttagttgaccatcccaagaaaatagctgttaattactttaagagc |
28087461 |
T |
|
| Q |
217 |
tactttttcttggacttatttgttgtatcacctattcctcaggtatatatcttcctatctctccatgttgtttgttgacaccg |
299 |
Q |
| |
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|||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28087462 |
tactttctcttcgacttatttgttgtatcacctcttcctcaggtatatatcttcctatctctccatgttgtttgttggcaccg |
28087544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 117 - 282
Target Start/End: Original strand, 28027451 - 28027616
Alignment:
| Q |
117 |
gcagtttaggttggcttatgtttctcctgagtcaagggatgttggtgctggggatttagtcgaccatcccaagaaactagctgttaattactttaagagc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| || ||||||||| |||||||| |||||||||||||| |||||| |||||||||||||||| |
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| T |
28027451 |
gcagtttaggttggcttatgtttctcctgagtctaggggtgctggtgctggtgatttagtttaccatcccaagaaaatagctgctaattactttaagagc |
28027550 |
T |
|
| Q |
217 |
tactttttcttggacttatttgttgtatcacctattcctcaggtatatatcttcctatctctccat |
282 |
Q |
| |
|
||||| ||||| ||| |||||||||||| |||| |||||||||||||| ||||||||||||||||| |
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| T |
28027551 |
tacttattctttgacgtatttgttgtattacctcttcctcaggtatatgtcttcctatctctccat |
28027616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 117 - 286
Target Start/End: Complemental strand, 27926519 - 27926350
Alignment:
| Q |
117 |
gcagtttaggttggcttatgtttctcctgagtcaagggatgttggtgctggggatttagtcgaccatcccaagaaactagctgttaattactttaagagc |
216 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||| ||||| | |||||||||||| ||||| || ||||||||||||||| || ||| |||||||||||||||| |
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|
| T |
27926519 |
gcagtttaggttagcttatgttgctcttgattcaagagttgttggtgctggagatttggttgaccatcccaagaaaataactgctaattactttaagagc |
27926420 |
T |
|
| Q |
217 |
tactttttcttggacttatttgttgtatcacctattcctcaggtatatatcttcctatctctccatgttg |
286 |
Q |
| |
|
|| |||||||| ||| ||| ||||||||||||| |||||||||||||| ||||||||||||||| ||||| |
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|
| T |
27926419 |
tattttttcttcgacgtatctgttgtatcacctcttcctcaggtatatttcttcctatctctccttgttg |
27926350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 288
Target Start/End: Original strand, 27907208 - 27907339
Alignment:
| Q |
157 |
gttggtgctggggatttagtcgaccatcccaagaaactagctgttaattactttaagagctactttttcttggacttatttgttgtatcacctattcctc |
256 |
Q |
| |
|
||||||||||| || ||||| ||| |||| |||||| | ||| |||||||| |||||| ||||||||||| |||||| ||| || ||||||| |||||| |
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| T |
27907208 |
gttggtgctggagagttagttgacaatcctaagaaaattgctcttaattaccttaagaattactttttcttcgacttacttgctgcatcacctcttcctc |
27907307 |
T |
|
| Q |
257 |
aggtatatatcttcctatctctccatgttgtt |
288 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |
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|
| T |
27907308 |
aggtatatttcttcttatctctccatgttgtt |
27907339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 336 - 436
Target Start/End: Original strand, 28087544 - 28087644
Alignment:
| Q |
336 |
gttacctcggtgtcacgttgatgccttaataaataatgtgtggaattgaacaagtgcttgatgatatgtagttgacacagaagaaaagggatttcaatct |
435 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | ||||||||||| ||||| |||| |||||||| ||||||| ||||||||||||||| ||||| |
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|
| T |
28087544 |
gttacctcggtgttgtgttgatgccttaataaatagtacgtggaattgaataagtgtttgacgatatgtatttgacacggaagaaaagggattttaatct |
28087643 |
T |
|
| Q |
436 |
g |
436 |
Q |
| |
|
| |
|
|
| T |
28087644 |
g |
28087644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 162 - 272
Target Start/End: Original strand, 28056767 - 28056877
Alignment:
| Q |
162 |
tgctggggatttagtcgaccatcccaagaaactagctgttaattactttaagagctactttttcttggacttatttgttgtatcacctattcctcaggta |
261 |
Q |
| |
|
||||||||| ||||| |||||||| | |||| |||||||||| ||| |||||| || |||||||| ||| ||||||||| ||||||| ||||||||||| |
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|
| T |
28056767 |
tgctggggaattagttgaccatccaaggaaaatagctgttaaataccttaagacttattttttcttcgacgtatttgttggatcacctcttcctcaggta |
28056866 |
T |
|
| Q |
262 |
tatatcttcct |
272 |
Q |
| |
|
||| ||||||| |
|
|
| T |
28056867 |
tatttcttcct |
28056877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 158 - 288
Target Start/End: Original strand, 27996413 - 27996543
Alignment:
| Q |
158 |
ttggtgctggggatttagtcgaccatcccaagaaactagctgttaattactttaagagctactttttcttggacttatttgttgtatcacctattcctca |
257 |
Q |
| |
|
||||||||| |||||||| |||||||||| || | | ||| ||| ||||| ||| | |||||||| | ||||||||||||| ||||||| ||||||| |
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|
| T |
27996413 |
ttggtgctgcagatttagttgaccatcccacgagaattgctcataactacttgaagggttacttttttatcgacttatttgttgcatcacctcttcctca |
27996512 |
T |
|
| Q |
258 |
ggtatatatcttcctatctctccatgttgtt |
288 |
Q |
| |
|
||||||| | |||| ||||||||| |||||| |
|
|
| T |
27996513 |
ggtatatttattcccatctctccaagttgtt |
27996543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 28530192 - 28530267
Alignment:
| Q |
117 |
gcagtttaggttggcttatgtttctcctgagtcaagggatgttggtgctggggatttagtcgaccatcccaagaaa |
192 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||| |||||||| || |||||||| || ||||||||||| |
|
|
| T |
28530192 |
gcagtttaggttggcctatgtttctccagagtcaagggtggttggtgccggagatttagttgatgatcccaagaaa |
28530267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 27893749 - 27893830
Alignment:
| Q |
117 |
gcagtttaggttggcttatgtttctcctgagtcaagggatgttggtgctggggatttagtcgaccatcccaagaaactagct |
198 |
Q |
| |
|
||||||||||||||||||||| | |||||||| || | ||||||||||| || ||||| |||||||| |||||| ||||| |
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|
| T |
27893749 |
gcagtttaggttggcttatgtggcccctgagtctagagtggttggtgctggagaattagttgaccatcctaagaaaatagct |
27893830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 288
Target Start/End: Original strand, 28012730 - 28012899
Alignment:
| Q |
119 |
agtttaggttggcttatgtttctcctgagtcaagggatgttggtgctggggatttagtcgaccatcccaagaaactagctgttaattactttaagagcta |
218 |
Q |
| |
|
|||||||| |||||||| |||||||| ||| |||| ||||||||||| |||||| | ||||||||||| | | ||| |||| ||| | |||| | |
|
|
| T |
28012730 |
agtttagggtggcttatatttctcctaggtccaggggggttggtgctggagatttaattgaccatcccaaaatgattgctcttaactacctcaagaatga |
28012829 |
T |
|
| Q |
219 |
ctttttcttggacttatttgttgtatcacctattcctcaggtatatatcttcctatctctccatgttgtt |
288 |
Q |
| |
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|||| || | ||||| ||| ||| || |||| ||||||||||| || |||||||||| ||||| |||||| |
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|
| T |
28012830 |
ctttctcattgacttctttattgcattacctcttcctcaggtacatttcttcctatcgctccacgttgtt |
28012899 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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