View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_high_37 (Length: 433)
Name: NF14307_high_37
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 153 - 422
Target Start/End: Complemental strand, 8138402 - 8138120
Alignment:
| Q |
153 |
gtgtcccatatacttggtcctctcccatctatatctgaagctccttctacctgaaaaattagaacaacaaaaacaaatggtaagtgatccatgcttactt |
252 |
Q |
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| T |
8138402 |
gtgtcccatatacttggtcctctcccatctatatctgaagctccttctacctgaaaagatagcacaacaaaaataaatggtaaatgattcatgcttactt |
8138303 |
T |
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| Q |
253 |
tttctccagcaggataacataacatcaaggtcctctatcatggtcatttggaaggcgcaaaactctcgta-nnnnnnnncaacaaacgattgtttcttga |
351 |
Q |
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| T |
8138302 |
tttctccagcaggaaaacataacatcaaggtcctctatcatggtcatttggaaggcgcaaaactctcgtatttttttttcaacaaacgattgtttcttga |
8138203 |
T |
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| Q |
352 |
tc------------ggatttaagcttcattctcgatggtggttgaaatctcaaaaaccaacttattttatgaattttaatttt |
422 |
Q |
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| T |
8138202 |
tcatttgtttgataggatttaagcttcattctcggtggtggttgaaatgtcaaaaaccaacttattttatgaattttaatttt |
8138120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 8138565 - 8138504
Alignment:
| Q |
18 |
ataaacatttgatacgtatgcaagatcgggagttcaaacatgcaatctcacattatttgcac |
79 |
Q |
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| T |
8138565 |
ataaacatttgatacgtatgcaagatcgggagttcaaacatgcaatctcacattatttgcac |
8138504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 8162639 - 8162568
Alignment:
| Q |
153 |
gtgtcccatatacttggtcctctcccatctatatctgaagctccttctacctgaaaaattagaacaacaaaa |
224 |
Q |
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| T |
8162639 |
gtgtcccatatacttggtcctctaccatctatatttgaagctccttctatctgaaaaatttgcacaacaaaa |
8162568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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