View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14307_high_40 (Length: 418)

Name: NF14307_high_40
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14307_high_40
NF14307_high_40
[»] chr5 (3 HSPs)
chr5 (16-397)||(27929211-27929592)
chr5 (16-398)||(28082244-28082626)
chr5 (109-377)||(27935335-27935603)
[»] chr3 (1 HSPs)
chr3 (224-362)||(46163458-46163596)


Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 27929211 - 27929592
Alignment:
Q  16 aatatcagagacaattattctttctttaaacatttatttttgctcaattgttttctttttgcaagtcccgttaattggcctaaactttgtcgctttttga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27929211 aatatcagagacaattattctttctttaaacatttatttttgctcaattgttttctttttgcaagtcccgttatttggcctaaactttgtcgctttttga 27929310  T
Q  116 atttatttctcgcctatctctggctgatgattaattgagttatcatcgaacaactttctattttctccatttcattgtgtttttactaatgttgtgattg 215  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27929311 atttatttctcgcctatctctggctgatgattagttgagttatcatcgaacaactttctattttctccaattcattgtgtttttactaatgttgtgattg 27929410  T
Q  216 aatgtccttgacaggtaccacagcaggaaaactcatttgattgtggcctctttttacttcattatctggagctcttcgtggctcaagttccatttgattt 315  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27929411 aatgtccttgacagataccacagcaggaaaactcatttgattgtggcctctttttgcttcattatctggagctcttcgtggctcaagttccatttgattt 27929510  T
Q  316 caacccttttacaccaaccaagttgtccaactttgtaagtggttttcatggtcgaattttttccaattattttattcctcac 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27929511 caacccttttacaccaaccaagttgtccaactttgtaagtggttttcatggtcgaattttttccaattattttattcctcac 27929592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 28082626 - 28082244
Alignment:
Q  16 aatatcagagacaattattctttctttaaacatttatttttgctcaattgttttctttttgcaagtcccgttaattggcctaaactttgtcgctttttga 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  28082626 aatatcagagacaattattctttctttaaacatttctttttgctcaattgttttctttttgcaagtcccattatttggcctaaactttgtcgctttttga 28082527  T
Q  116 atttatttctcgcctatctctggctgatgattaattgagttatcatcgaacaactttctattttctccatttcattgtgtttttactaatgttgtgattg 215  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||    
T  28082526 atttatttctcgcctatctctggctgatgattagttgagttatcatcgaacaactttctattttctccatttgattgtgcttttactaatgttgtgactg 28082427  T
Q  216 aatgtccttgacaggtaccacagcaggaaaactcatttgattgtggcctctttttacttcattatctggagctcttcgtggctcaagttccatttgattt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  28082426 aatgtccttgacaggtaccacagcaggaaaactcatttgattgtggcctctttttgcttcattatctagagctcttcgtggctcaagttccatttgattt 28082327  T
Q  316 caacccttttacaccaaccaagttgtccaactttgtaagtggttttcatggtcgaattttttccaattattttattcctcact 398  Q
    ||||||| | | || |||||| |  |||||||||||||||||||||||||||  | ||||||||||||||||| |||||||||    
T  28082326 caaccctctgagactaaccaattgttccaactttgtaagtggttttcatggttaacttttttccaattattttgttcctcact 28082244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 109 - 377
Target Start/End: Original strand, 27935335 - 27935603
Alignment:
Q  109 tttttgaatttatttctcgcctatctctggctgatgattaattgagttatcatcgaacaactttctattttctccatttcattgtgtttttactaatgtt 208  Q
    |||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  27935335 tttttgaatttattcctctcctatctctggctgatgattagttgagttatcatcgaacaactttctattttctccatttgattgtgcttttactaatgtt 27935434  T
Q  209 gtgattgaatgtccttgacaggtaccacagcaggaaaactcatttgattgtggcctctttttacttcattatctggagctcttcgtggctcaagttccat 308  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||| |||| | | | || ||||||    
T  27935435 gtgactgaatgtccttgacaggtaccacagcaggaaaacaaatttgattgtggcctctttttacttcattatctagagcgcttcctagatgaaattccat 27935534  T
Q  309 ttgatttcaacccttttacaccaaccaagttgtccaactttgtaagtggttttcatggtcgaatttttt 377  Q
     ||||||||||||||| | || || |||||| ||||||||||||||||||||||||||| || ||||||    
T  27935535 ctgatttcaaccctttgatactaatcaagttctccaactttgtaagtggttttcatggttgactttttt 27935603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 362
Target Start/End: Original strand, 46163458 - 46163596
Alignment:
Q  224 tgacaggtaccacagcaggaaaactcatttgattgtggcctctttttacttcattatctggagctcttcgtggctcaagttccatttgatttcaaccctt 323  Q
    |||||| | |||||||| |||||||||| |||||||||||||||| | || || || || ||||||||| | ||| ||| |||  ||  |||||| || |    
T  46163458 tgacagttgccacagcaagaaaactcatatgattgtggcctctttctgctgcactacctagagctcttccttgctgaagctcctcttactttcaatccat 46163557  T
Q  324 ttacaccaaccaagttgtccaactttgtaagtggttttc 362  Q
    | | |  ||||||||| ||||| ||||||||| ||||||    
T  46163558 tcaaagtaaccaagttttccaattttgtaagtcgttttc 46163596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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