View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_high_42 (Length: 411)
Name: NF14307_high_42
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 411
Target Start/End: Original strand, 24051398 - 24051790
Alignment:
| Q |
16 |
atgcatatgaaaatatgttatgttaatgtatttcaatgtaaactaatccattttttatttaactatcaactatgttatttatttaaatcaaatttctttg |
115 |
Q |
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| T |
24051398 |
atgcatatgaaaatatgttttgttaatgtatttcaatgtaaactaatccattttttatttaactatcaactatgttatttatttaaatcaaatttctttg |
24051497 |
T |
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| Q |
116 |
gtcaaagtatttaatcatatttgacaatgtacataaataataatctatagatgatataaacaagcttctggatatcaaaataaaattattatatccaatt |
215 |
Q |
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| T |
24051498 |
gtcaaagtatttaatcatatttgaccatgtacataaataataaactatagataatataaacaagcgtctggatatcaaaataaaattattatatccaatt |
24051597 |
T |
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| Q |
216 |
aaatcatnnnnnnnnnnnnnnnnnntatacttatatggaaaaattgctgcaattaataattgtcaac-nnnnnnnnaagtcaattttcttttgactgtta |
314 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24051598 |
aaatcat----aaaaaacaagaaaatatacttatatggaaaaattgctgcaattaataattgtcaactttttttttaagtcaattttcttttgactgtta |
24051693 |
T |
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| Q |
315 |
aatcaaacatttgttaaggttcataaattattcatacgtatatcaaacacaaccttatttaaatgtaacctctaaaaatattcaaactcattaaaaa |
411 |
Q |
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| T |
24051694 |
agtcaaacatttgttaacgtacatacattatttatacatatatcaaacacaaccttatttaaatgtaacctctaaaaatattcaaactcattaaaaa |
24051790 |
T |
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