View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14307_high_5 (Length: 663)
Name: NF14307_high_5
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 14 - 645
Target Start/End: Original strand, 1623601 - 1624244
Alignment:
| Q |
14 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagacagaga---------- |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1623601 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgatatagcacaccgatagaagacagagagatcggaggc |
1623700 |
T |
|
| Q |
104 |
---tcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1623701 |
tgatcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctgaatttaaa |
1623800 |
T |
|
| Q |
201 |
agattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgctagacaagttgcaagaaagccattagacactta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |
|
|
| T |
1623801 |
agattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgttagacaagttgcaagaaagccattagagaatta |
1623900 |
T |
|
| Q |
301 |
tgaatatcatatatagctatgatataaagagcacatttccgtgacatctaattttcaacactgatttactattgaattttagggctttaaaactagaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1623901 |
tgaatatcatatatagctatgatataaagagcacatttccatgacatctaattttcaacactgatttactattgaattttagggctttaaaactagaaaa |
1624000 |
T |
|
| Q |
401 |
aactaaatagggcttttcagcactgatttacacaaagatacatgtagattgattttatttttccagtctctatctttcgttgttagttcgactttttcaa |
500 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1624001 |
aactaaatagggcttttcaacactgatttacacaaagatacatgtagattgattttatttttccagtctctatctttcgttgttagttcgactttttcaa |
1624100 |
T |
|
| Q |
501 |
gcagtgaatattgttttttctcttataacaagaacataaaacaggaaatgaaatataaatcacctgctgttgcagagctataagtggtataaccaccttg |
600 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1624101 |
gcagtgaatattg-tttttctcttataacaagaacataaaacaggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttg |
1624199 |
T |
|
| Q |
601 |
aacacttctagaacttgttattatggtattttgcatcccatcacc |
645 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1624200 |
aacacttctagaacttgttattatggtattttgcatcccatcacc |
1624244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 392
Target Start/End: Original strand, 1606479 - 1606873
Alignment:
| Q |
14 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagac--agagatcggag-- |
109 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || || || |||||||||||||| || ||||||||||| |
|
|
| T |
1606479 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggc |
1606578 |
T |
|
| Q |
110 |
---------cgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
200 |
Q |
| |
|
|||||| ||||| || ||||| ||||| || |||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
1606579 |
tgatcttagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaatacctaaatttaaa |
1606678 |
T |
|
| Q |
201 |
agattcaagagaaatatgtaaaaa-ttagaaactataaataacattctaaactcta--aagtgttcgtgctagacaagttgcaagaaagccattagacac |
297 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
1606679 |
tgatccaagagaaatatgtaaaaaattagaaactataaataacaatctaaactctataaagtgttcgtgctacataagttgcaagaaagccattagacca |
1606778 |
T |
|
| Q |
298 |
ttatgaatatcatatatagctatgatataaagagcacatttccgtgacatctaattttcaacactgatttactattgaattttagggctttaaaa |
392 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1606779 |
gtatgaatatcatatatacctatgatataaagagcacatttccgtgacaactagttttaaacactgatttagtattgaattttagggctttaaaa |
1606873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 477 - 645
Target Start/End: Original strand, 1607056 - 1607223
Alignment:
| Q |
477 |
tcgttgttagttcgactttttcaagcagtgaatattgttttttctcttataacaagaacataaaacaggaaatgaaatataaatcacctgctgttgcaga |
576 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1607056 |
tcgttgttagttaaactttttctagcagtgaatattgtttt-tctcttataacaagaacataaaacaggaaatgaaatataattcacctgctgttgcaga |
1607154 |
T |
|
| Q |
577 |
gctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcacc |
645 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1607155 |
gctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcacc |
1607223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 543 - 645
Target Start/End: Original strand, 1630117 - 1630219
Alignment:
| Q |
543 |
aggaaatgaaatataaatcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
642 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630117 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1630216 |
T |
|
| Q |
643 |
acc |
645 |
Q |
| |
|
||| |
|
|
| T |
1630217 |
acc |
1630219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 1629777 - 1629987
Alignment:
| Q |
14 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagac--agagatcgg---- |
107 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || || || |||||||||||||| || ||||||||| |
|
|
| T |
1629777 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggacgc |
1629876 |
T |
|
| Q |
108 |
-------agcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
200 |
Q |
| |
|
|||||||||||||| || ||||| ||||| || |||||||| ||||| ||||| ||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
1629877 |
tgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaa |
1629976 |
T |
|
| Q |
201 |
agattcaagag |
211 |
Q |
| |
|
||| |||||| |
|
|
| T |
1629977 |
tgatccaagag |
1629987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 10820921 - 10820711
Alignment:
| Q |
14 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagacagaga---------- |
103 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||| || |||||||| || ||||| || | |||||| |||||||| |||| |
|
|
| T |
10820921 |
agatgaagcattgtctgtaaaattgacgttgtgcatgagccatgagggtgtcttggtaacccgatattgtacaccggtagaagacggagagatcagaggc |
10820822 |
T |
|
| Q |
104 |
---tcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
200 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||||| || |||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10820821 |
tgatcggagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaatacctaaatttaaa |
10820722 |
T |
|
| Q |
201 |
agattcaagag |
211 |
Q |
| |
|
||| |||||| |
|
|
| T |
10820721 |
tgatccaagag |
10820711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 552 - 645
Target Start/End: Complemental strand, 10820153 - 10820060
Alignment:
| Q |
552 |
aatataaatcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcacc |
645 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
10820153 |
aatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcacc |
10820060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 4e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 18781295 - 18781563
Alignment:
| Q |
14 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagacagaga---------- |
103 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||| ||||| || |||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
18781295 |
agatgaagcattgtctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccgatagaagacagagagatcggaggc |
18781394 |
T |
|
| Q |
104 |
---tcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
200 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18781395 |
tgatcggagcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaaatgaagtccatcaatgcctgaatttaaa |
18781494 |
T |
|
| Q |
201 |
agattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgcta |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
18781495 |
agattcaagagaaatatgtaaaaattagaaactataaataacaatctaaactctaaagtgtccgtgcta |
18781563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 477 - 645
Target Start/End: Original strand, 18785103 - 18785270
Alignment:
| Q |
477 |
tcgttgttagttcgactttttcaagcagtgaatattgttttttctcttataacaagaacataaaacaggaaatgaaatataaatcacctgctgttgcaga |
576 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
18785103 |
tcgttgttagttaaactttttctagcagtgaatattgtttt-tctcttataacaagaacacaaaacaggaaatgaattataattcacctgctgttgcaga |
18785201 |
T |
|
| Q |
577 |
gctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcacc |
645 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18785202 |
gctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcacc |
18785270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 12802995 - 12803052
Alignment:
| Q |
135 |
ccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgccta |
192 |
Q |
| |
|
||||| || |||| ||| |||||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
12802995 |
ccagccgtgttttcaaaagtaatgtcacgtgcaatgaagtgaagaccatcaattccta |
12803052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University