View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_high_78 (Length: 284)
Name: NF14307_high_78
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_78 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 7152957 - 7152704
Alignment:
| Q |
17 |
aagaacatctagaagatcttcgttctcaacttcattgttgtcgtcttcttttgctctttctcgcttttcttgatgttgtctaataatgttttcaatgatt |
116 |
Q |
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| T |
7152957 |
aagaacatctagaagatcttcgttatcaacttcattgttgtcgtcttcttttgctctttctcgcttttcttgatgttgtctaataatgttttcaatgatt |
7152858 |
T |
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| Q |
117 |
ttgtctacacgcttgtgaattttctccaattttggtttcattccagatagtatatgtaacggtttaatcgaaggaaacaaatcatcgacaccaaatccac |
216 |
Q |
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| T |
7152857 |
ttgtctacacgcttgtgaattttctccaatttcggtttcattccagatagtatatgtaacggtttaatcgaaggaaacaaatcatcgacaccaaatccac |
7152758 |
T |
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| Q |
217 |
tcgacatttccacaacctttctaaccaaatcaacaaattcatcctggtcctttg |
270 |
Q |
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| T |
7152757 |
tcgacatttccacaacctttctaaccaaatcaacaaattcatcctggtcctttg |
7152704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 7141126 - 7141001
Alignment:
| Q |
17 |
aagaacatctagaagatcttcgttctcaacttcattgttgtcgtcttcttttgctctttctcgcttttcttgatgttgtctaataatgttttcaatgatt |
116 |
Q |
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||||||||| | ||||||||| ||||||| |||| | |||| |||| ||| ||||| ||| |||||||||||||| ||| | || || || | |||| |
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| T |
7141126 |
aagaacatccacaagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctcttttcttgatgttttctcacaacattatccaagatt |
7141027 |
T |
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| Q |
117 |
ttgtctacacgcttgtgaattttctc |
142 |
Q |
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|||||||| | |||||||||||||| |
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| T |
7141026 |
ttgtctacccttttgtgaattttctc |
7141001 |
T |
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