View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_high_79 (Length: 277)
Name: NF14307_high_79
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_79 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 2082870 - 2083066
Alignment:
| Q |
1 |
acttacacaaatcatcatccattgggtaattttcctagctactacaagacaaaacatgccctattattttatccacaaaaagctaaagggctacacaaag |
100 |
Q |
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| T |
2082870 |
acttacacaaatcatcatccattgggtaattttcctagctactacaagacaaaacatgccctattattttatccacaaaaagctaaagggctacacaaag |
2082969 |
T |
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| Q |
101 |
ggatcctagcaaatttcttatcgttttcctcctttggcgtttgttcatcaatgagtgaaacatgcattatcatggaataaagaaaaagttccatatg |
197 |
Q |
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| T |
2082970 |
ggatcctagcaaatttcttatcgttttcctcctttggcgtttgttgatcaatgagtgaaacatgcattatcatggaataaagaaaaagttccatatg |
2083066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 2083092 - 2083138
Alignment:
| Q |
218 |
gagtctttgggataccacaatctttgagcatcgttgtttgttccttc |
264 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
2083092 |
gagtctttgggataccacaatctttcagcattgttgtttgttccttc |
2083138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 2082839 - 2082869
Alignment:
| Q |
1 |
acttacacaaatcatcatccattgggtaatt |
31 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2082839 |
acttacacaaatcatcatccattgggtaatt |
2082869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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