View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_high_8 (Length: 644)
Name: NF14307_high_8
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_8 |
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| [»] scaffold0009 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 36480601 - 36480925
Alignment:
| Q |
16 |
gatgaatcttcttgtacaaaagaaaaggttggatcttctaccnnnnnnnn-gtttggatcttcaatatcaaatcccaaaacaattttacttccattattc |
114 |
Q |
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| T |
36480601 |
gatgaatcttcttgtacaaaagaaaaggttggatcttctaccaaaaaaaaagtttggatcttcaatatcaaatcccaaaataattttacttccattattc |
36480700 |
T |
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| Q |
115 |
aattattagcactgcagtatcaaaattcattcttgataaagtatcttcaacaaattctgttaggaaaatctacattgnnnnnnntcatggtaaaataatg |
214 |
Q |
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| T |
36480701 |
aattattagcactgcagtatcaaaattcattcttgataaagtatcttcaacaaattctgttaggaaaatctacattgaaaaaaatcatggtaaaataatg |
36480800 |
T |
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| Q |
215 |
attccttcaatgatgatacacgatggttgtaagtgaaaaattcaatnnnnnnntggcttgaagattgaaccaatataagattgatatatccttgtgaatt |
314 |
Q |
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| T |
36480801 |
attccttcaatgatgatacacgatggttgtaagtgaaaaattcaataaaaaaatggcttgaagattgaaccaataaaagattgatatatccttgtgaatt |
36480900 |
T |
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| Q |
315 |
tttcattaagttcatgactattttg |
339 |
Q |
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| T |
36480901 |
tttcattaagttcatgactattttg |
36480925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 412 - 628
Target Start/End: Original strand, 36480994 - 36481210
Alignment:
| Q |
412 |
tacacacgtagaaactacaattagctactctaggaccagattcacatcattagagcaacttcatgacttagatatttcattacgaatcgtttgcttcatt |
511 |
Q |
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| T |
36480994 |
tacacacgtagaaactacaattagctactctaggaccagattcacatcattagagcaacttcatgacttagatatttcattacgaatcgtttgcttcgtt |
36481093 |
T |
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| Q |
512 |
gaaaaacacatgtttctctgtatcaaaacctgcatgagaatgaaaatcaaattaggagaattcagtgtcactgtgatagaaaatagataaagcaattgca |
611 |
Q |
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| T |
36481094 |
gaaaaacacatgtttctctgtatcaaaacctgcatgagaatgaaaatcaaattaggagaattcagtgtcactgtgatagaaaatagataaagcaattgca |
36481193 |
T |
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| Q |
612 |
acacacatgtaaaatat |
628 |
Q |
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| T |
36481194 |
acacacatgtaaaatat |
36481210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 474 - 568
Target Start/End: Complemental strand, 9895 - 9801
Alignment:
| Q |
474 |
atgacttagatatttcattacgaatcgtttgcttcattgaaaaacacatgtttctctgtatcaaaacctgcatgagaatgaaaatcaaattagga |
568 |
Q |
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| T |
9895 |
atgacttagatatttcattactaaacgtttgcatcattggaaaacacatattcctctatatcaagaactgcatgagattgaaaataaaattagga |
9801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 10195 - 10153
Alignment:
| Q |
297 |
gatatatccttgtgaattttt-cattaagttcatgactatttt |
338 |
Q |
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| T |
10195 |
gatatatccttgtgaattttttcattaagttcatgactttttt |
10153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 161
Target Start/End: Complemental strand, 10345 - 10316
Alignment:
| Q |
132 |
tatcaaaattcattcttgataaagtatctt |
161 |
Q |
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| T |
10345 |
tatcaaaattcattcttgataaagtatctt |
10316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 22201521 - 22201444
Alignment:
| Q |
68 |
ttggatcttcaatatcaaatcccaaaacaattttacttccattattcaa-ttattagcactgcagtatcaaaattcat |
144 |
Q |
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| T |
22201521 |
ttggatcttcaacgtcaaatcccaaaacaattttatttccattattcaagttactagcattgcagtatcaaaattcat |
22201444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 510 - 598
Target Start/End: Complemental strand, 6941489 - 6941401
Alignment:
| Q |
510 |
ttgaaaaacacatgtttctctgtatcaaaacctgcatgagaatgaaaatcaaattaggagaattcagtgtcactgtgatagaaaataga |
598 |
Q |
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| T |
6941489 |
ttgaaaaacacatgttcctttgaatcaagacctgcatgagatgggaaatctaattaagagaatccagtgacactgtaatagaaaataga |
6941401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 22201549 - 22201512
Alignment:
| Q |
16 |
gatgaatcttcttgtacaaaagaaaaggttggatcttc |
53 |
Q |
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| T |
22201549 |
gatgaatcttcttgtacaaaagaaaaggttggatcttc |
22201512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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