View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_high_87 (Length: 252)
Name: NF14307_high_87
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_high_87 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7638895 - 7638674
Alignment:
| Q |
1 |
aaagagacattaacgttagtttaacgttgcaggttacgttacgttagataatatattatacacgcacaattgcatttagatttttgtgtgttgtggaatg |
100 |
Q |
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| T |
7638895 |
aaagagacattaacgttagtttaacgttgcaggttacgttacgttagata------------cgcacaattgcatttagatttttgtgtgttgtggaatg |
7638808 |
T |
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| Q |
101 |
attctgacataaaaaacaaagttcaatagattcgaaaacactttgtgtttgaatgaatagggcaaaatcttcatggtaaataaaattgattttgtaatag |
200 |
Q |
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| T |
7638807 |
attctgacataaaaaacaaagttcaatagattcgaaaacactttgtgtttgaatgaatatggcaatatcttcatggtaaataaaattgattttgtaatag |
7638708 |
T |
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| Q |
201 |
gtagaatttaaaactattattaattgttgaattt |
234 |
Q |
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| T |
7638707 |
gtagaatttaaaactattattaattgttgaattt |
7638674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 7632028 - 7631889
Alignment:
| Q |
55 |
attatacacgcacaattgcatttagatttttgtgtgttgtggaatgattctgacataaaaaacaaagttcaatagattcgaaaacact--ttgtgtttga |
152 |
Q |
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||||||||| ||| ||| |||||||||||||||| ||| | |||||||| |||| |||||||||||||||||||| | ||||||||| |||||||||| |
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| T |
7632028 |
attatacactcacgattacatttagatttttgtgcgttataaaatgattccgacagaaaaaacaaagttcaatagacttgaaaacacttcttgtgtttga |
7631929 |
T |
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| Q |
153 |
atgaatagggcaaaatcttcatggtaaataaaattgattttg |
194 |
Q |
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| T |
7631928 |
ataaat--ggcaaaatcttattgataaataaaattgattttg |
7631889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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