View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14307_high_98 (Length: 237)

Name: NF14307_high_98
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14307_high_98
NF14307_high_98
[»] chr2 (3 HSPs)
chr2 (14-206)||(14394938-14395130)
chr2 (119-158)||(14395229-14395268)
chr2 (40-92)||(929009-929061)
[»] chr4 (2 HSPs)
chr4 (34-91)||(28703627-28703684)
chr4 (58-96)||(21328005-21328043)
[»] chr7 (1 HSPs)
chr7 (38-91)||(40090714-40090767)
[»] scaffold0008 (1 HSPs)
scaffold0008 (28-92)||(240562-240626)
[»] chr6 (1 HSPs)
chr6 (48-88)||(2617108-2617148)
[»] chr5 (1 HSPs)
chr5 (40-92)||(19961522-19961574)
[»] chr1 (1 HSPs)
chr1 (35-67)||(8981110-8981142)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 14395130 - 14394938
Alignment:
Q  14 taaatttgtaaaagtttttggacaaaatttctactttagattatttaacatgtgtcataaggatacaagttaacatttctattgtattatgatgcttcaa 113  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14395130 taaatttgtaaaagtttttggacaaaattt-tactttaaattctttaacatgtgtcataaggatacaagttaacatttctcttgtattatgatgcttcaa 14395032  T
Q  114 accattagtattaatttatatatttactactaaaaatgaattattaaatgatgcttc-aaacccaaaaccttttttattcaaattgaccctcaa 206  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||    
T  14395031 accagtagtattaatttatatatttactactaaaaatgaattattaaatgatgcttcaaaacccaaaatcttttctattcaaattgaccctcaa 14394938  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 14395268 - 14395229
Alignment:
Q  119 tagtattaatttatatatttactactaaaaatgaattatt 158  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  14395268 tagtattaatttagatatttactactaaaattgaattatt 14395229  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 929061 - 929009
Alignment:
Q  40 atttctactttagattatttaacatgtgtcataaggatacaagttaacatttc 92  Q
    ||||||||||| || | |||||| |||||| |||||| |||||||||||||||    
T  929061 atttctacttttgactctttaacttgtgtcttaaggacacaagttaacatttc 929009  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 28703684 - 28703627
Alignment:
Q  34 gacaaaatttctactttagattatttaacatgtgtcataaggatacaagttaacattt 91  Q
    ||||||||||  |||||||||| |||||||| |||| |||||| ||||||||||||||    
T  28703684 gacaaaattttcactttagattctttaacatatgtcttaaggacacaagttaacattt 28703627  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 21328005 - 21328043
Alignment:
Q  58 ttaacatgtgtcataaggatacaagttaacatttctatt 96  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  21328005 ttaacatgtgtcgtaaggacacaagttaacatttctatt 21328043  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 40090714 - 40090767
Alignment:
Q  38 aaatttctactttagattatttaacatgtgtcataaggatacaagttaacattt 91  Q
    |||||||||||||| |||  |||  ||||||||||||||||||| |||||||||    
T  40090714 aaatttctactttacattccttagtatgtgtcataaggatacaaattaacattt 40090767  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 240626 - 240562
Alignment:
Q  28 tttttggacaaaatttctactttagattatttaacatgtgtcataaggatacaagttaacatttc 92  Q
    ||||| ||||||| ||||| ||||||||  |||||||||| | |||||  |||||||||||||||    
T  240626 tttttagacaaaacttctattttagattgcttaacatgtgccctaagggcacaagttaacatttc 240562  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 2617108 - 2617148
Alignment:
Q  48 tttagattatttaacatgtgtcataaggatacaagttaaca 88  Q
    |||||||| ||||||||||| |||||||| |||||||||||    
T  2617108 tttagattttttaacatgtgccataaggacacaagttaaca 2617148  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 19961574 - 19961522
Alignment:
Q  40 atttctactttagattatttaacatgtgtcataaggatacaagttaacatttc 92  Q
    ||||||||||| ||||  ||||| ||||||||||||| |||| ||||||||||    
T  19961574 atttctacttttgattcattaacttgtgtcataaggacacaaattaacatttc 19961522  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 8981142 - 8981110
Alignment:
Q  35 acaaaatttctactttagattatttaacatgtg 67  Q
    ||||||||||||||||||||| |||||||||||    
T  8981142 acaaaatttctactttagattctttaacatgtg 8981110  T

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