View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14307_low_10 (Length: 640)

Name: NF14307_low_10
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14307_low_10
NF14307_low_10
[»] chr1 (7 HSPs)
chr1 (317-625)||(52077262-52077572)
chr1 (318-625)||(3615977-3616287)
chr1 (163-251)||(52077624-52077704)
chr1 (159-251)||(3616352-3616436)
chr1 (193-249)||(12666941-12666996)
chr1 (18-57)||(52077842-52077881)
chr1 (16-57)||(3616566-3616607)
[»] chr7 (3 HSPs)
chr7 (318-625)||(16756567-16756876)
chr7 (159-232)||(16756443-16756516)
chr7 (16-56)||(16756272-16756312)
[»] chr6 (1 HSPs)
chr6 (416-528)||(7309443-7309553)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 317 - 625
Target Start/End: Complemental strand, 52077572 - 52077262
Alignment:
Q  317 ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatc 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  52077572 ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacaac 52077473  T
Q  417 cctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcctt 516  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52077472 cctttcacaaaaccaattcatgttttctctctcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcctt 52077373  T
Q  517 ctctctgtcgagcacagaatcatcaatagtgtcctctttcatcgtcctttatttaatttacaagggtcatataatgtttaaaatccattatccct--tat 614  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| |||||  |||    
T  52077372 ctctctgtcgagcacagaatcatcaatagcgtcctctttcatcgtcctttatttaatttacaagggtcatataataattaaaatcaattgtcccttatat 52077273  T
Q  615 gtattttcatc 625  Q
    |||||||||||    
T  52077272 gtattttcatc 52077262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 318 - 625
Target Start/End: Complemental strand, 3616287 - 3615977
Alignment:
Q  318 tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc 417  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  3616287 tggttccttttagaaacaagattagtatttacaattaacccataaaaaatattattattaattctggttgttattaactattgttcatcgatctacaacc 3616188  T
Q  418 ctttcacaaaa-ccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcctt 516  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  3616187 ctttcacaaaaaccaattcatgttttctctctcaacaaacagtacataatttctcttatcactcactgtcgccgtttcctttctgcttcttcccttcctt 3616088  T
Q  517 ctctctgtcgagcacagaatcatcaatagtgtcctctttcatcgtcctttatttaatttacaagggtcatataatgtttaaaatccattatccct--tat 614  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||  |||    
T  3616087 ctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttatttaatttagaagggtcatataatgtttaaaatccattgtcccttatat 3615988  T
Q  615 gtattttcatc 625  Q
    |||||||||||    
T  3615987 gtattttcatc 3615977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 52077704 - 52077624
Alignment:
Q  163 tctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcactg 251  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||||    
T  52077704 tctccaggaatcttcatatcttcttctcccaaattcat--------cacacaccaccatcataaattcatccctacaccaccatcactg 52077624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 3616436 - 3616352
Alignment:
Q  159 ttcatctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcactg 251  Q
    ||||||||||||||||||||||||||||||||||||||        |||||| ||||| ||||||||||||||||| ||||||| ||||||||    
T  3616436 ttcatctccaggaatcttcatatcttcttctcccaaat--------tcatcagacaccgccatcataaattcatccatacaccaccatcactg 3616352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 12666996 - 12666941
Alignment:
Q  193 aaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcac 249  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  12666996 aaattcataaat-catcacacaccaccatcataaattcatcactacaccaccatcac 12666941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 52077881 - 52077842
Alignment:
Q  18 catcatcatcaccattgatttctattaataataaacccag 57  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52077881 catcatcatcaccattgatttctattaataataaacccag 52077842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 3616607 - 3616566
Alignment:
Q  16 atcatcatcatcaccattgatttctattaataataaacccag 57  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  3616607 atcatcatgatcaccattgatttctattaataataaacccag 3616566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 318 - 625
Target Start/End: Original strand, 16756567 - 16756876
Alignment:
Q  318 tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc 417  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||    
T  16756567 tggttccttttagaatcaagatttgtatttacgattaacccataaaaaatattattattaattttggttgttattaactattgttcatcgatctacaacc 16756666  T
Q  418 ctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttccttc 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  16756667 ctttcacaaaaccaattcatgttttctctctcaacaaacagtatataatttctcttatcactcactatcgttgtttccttcctgcttcttcccttccttc 16756766  T
Q  518 tctctgtcgagcacagaatcatcaatagtgtcctctttcatcgtcctttatttaatttacaagggtcatataatgtttaaaatccattatccct--tatg 615  Q
    ||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||    
T  16756767 tctctgtcgagcacaaaatcatcaataacatcctctttcatcgtcctttatttaatttacaagggtcatataatgtttaaaatccattgtcccttatatg 16756866  T
Q  616 tattttcatc 625  Q
    ||||||||||    
T  16756867 tattttcatc 16756876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 16756443 - 16756516
Alignment:
Q  159 ttcatctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcat 232  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16756443 ttcatctccatgaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcat 16756516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 16756272 - 16756312
Alignment:
Q  16 atcatcatcatcaccattgatttctattaataataaaccca 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16756272 atcatcatcatcaccattgatttctattaataataaaccca 16756312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 416 - 528
Target Start/End: Original strand, 7309443 - 7309553
Alignment:
Q  416 ccctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcct 515  Q
    |||||||||||||| | ||||||||||||||  ||||||| |||||||||||||||||| |||  ||| ||  ||||||||||| ||||||||  |||||    
T  7309443 ccctttcacaaaacaagttcatgttttctct--caacaaaaagtatataatttctcttaccaccaactctcaccgtttcctttcagcttcttcttttcct 7309540  T
Q  516 tctctctgtcgag 528  Q
    |||||||||||||    
T  7309541 tctctctgtcgag 7309553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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