View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_100 (Length: 243)
Name: NF14307_low_100
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_100 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 46888811 - 46888590
Alignment:
| Q |
13 |
tgcattcatcttgttagaattggattttctgcattgtaacggatctcaaccgtcgactttaaatcaacgtatgagatcattttaattaaaaaatcacagt |
112 |
Q |
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| T |
46888811 |
tgcattcatcttgttagaattggattttctgtattgtaacggatctcaaccgtcgactttaaatcaacgtatgagatcattttaactaaaaaatcacagt |
46888712 |
T |
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| Q |
113 |
ttttaatttaaaatatctgatcttagattgacggttgagattaaaaactacatgtaatttagtattgattactgtagcaaatcttgtcatagatatgggt |
212 |
Q |
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| T |
46888711 |
ttttaatttaaaatgtctgatcttagattgacggttgagattaaaaactacatgtaatttagtattgattactgtagcaaatcttgtcatagatatgggt |
46888612 |
T |
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| Q |
213 |
gaggatacatttttatattctt |
234 |
Q |
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| T |
46888611 |
gaggatacatttttattttctt |
46888590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 46870006 - 46869784
Alignment:
| Q |
17 |
ttcatcttgttagaattggattttctgcattgtaacggatctcaaccgt-cgactttaaatcaacgtatgagatcattttaattaaaaaatcacagtttt |
115 |
Q |
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| T |
46870006 |
ttcatcttgttagaactgaattttatgcattgtaacagatttcaaccgttcgattttaaatcaatgtatgagatcattttaagtaaaaagttacaatttt |
46869907 |
T |
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| Q |
116 |
taatttaaaatatctgatcttagattgacggttgagat-taaaaactac----atgtaatttagtattgattactgtagcaaatcttgtcatagatatgg |
210 |
Q |
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| T |
46869906 |
taatttaagctgtttgatcttagctcgacagttgagataaaaaaacaacatgtatgtaactcagtatttattaccgtagcaaatcttgtcatagatatgg |
46869807 |
T |
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| Q |
211 |
gtgaggatacatttttatattct |
233 |
Q |
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| T |
46869806 |
gtgaggatacatttttattttct |
46869784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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