View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_104 (Length: 239)
Name: NF14307_low_104
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_104 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4687296 - 4687515
Alignment:
| Q |
1 |
ttaagagctgcatacaaataatctgattattagacatttacacttaactaatgaatgattatatccttcaactaccatatagaaatatcattaatcaatt |
100 |
Q |
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| T |
4687296 |
ttaagagctgcatacaaataatctgattattagacatttacacttaactaatgaatgattatatccttcaactaccatatagaagtatcattaatcaatt |
4687395 |
T |
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| Q |
101 |
ctctataattatattcaacagtacaccggataaagaagtcgagtaatgggattttatacatatacatgacactgtcatgcactgcaatacaaattataca |
200 |
Q |
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| T |
4687396 |
ctctataat--tattcaacagtacaccggataaagaagtcgagtaatgggattttatacatatacatgacactgtcatgcactgcaatacaaattataca |
4687493 |
T |
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| Q |
201 |
atgcaatgcagtcaaacataga |
222 |
Q |
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||||||||||| |||||||||| |
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| T |
4687494 |
atgcaatgcagccaaacataga |
4687515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 4685186 - 4685375
Alignment:
| Q |
1 |
ttaagagctgcatacaaataatctgattattagacatttacacttaactaatgaatgattatatccttcaactaccatatagaaatatcattaatcaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
4685186 |
ttaagagctgcatacaaataatctgattattacacatttacacttaactaagcaatgattatatccttcaactaccatatagaagtatcattgatcaatt |
4685285 |
T |
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| Q |
101 |
ctctataattatattcaacagtacaccggataaagaagtcgagtaatgggattttatacatatacatgacactgtcatgcactgcaatacaa |
192 |
Q |
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|||||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||| |
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| T |
4685286 |
ttctataat--tatttaacagtacaccggatacagaagtcgagtgatgggattttatacatatacatgactctgttatgcactgtaatacaa |
4685375 |
T |
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