View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_106 (Length: 236)
Name: NF14307_low_106
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_106 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 125725 - 125946
Alignment:
| Q |
1 |
ttcgtattaatttcaagatataatgctcaactcatgttgtgttacttacatgatccaaaattactaacaagagataaaatgctacagatgttactttctt |
100 |
Q |
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| T |
125725 |
ttcgtattaatttcaagatataatgcgcaactcatgttgtgttacttacatgatccaaaattactaacaagagataaaatgctacatatgttactttctt |
125824 |
T |
|
| Q |
101 |
caccttcaatttcgaatattcatgtttatcatgcttctttcactgcactcatttcgacaagcttttcttct-attcatttcaacatacatttcgtcaatc |
199 |
Q |
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| T |
125825 |
caccttcaatttcgaatattcatgtttatcatgcttctttcactgcactcatttcgacaaccttttcttctaattcatttcaacgtacatttcgtcaatc |
125924 |
T |
|
| Q |
200 |
aatggtttctaataacaaatac |
221 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
125925 |
aatggtttctaataacaaatac |
125946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 4412707 - 4412648
Alignment:
| Q |
149 |
tcatttcgacaagcttttcttctattcatttcaacatacatttcgtcaatcaatggtttc |
208 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
4412707 |
tcatttcgacaagcttttcttctattcatttcagcatacatttcctcaatcaatggtttc |
4412648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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