View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_112 (Length: 230)
Name: NF14307_low_112
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_112 |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 21641852 - 21641702
Alignment:
| Q |
11 |
aagaatatgagaacacctatgagcctctcattctagaagaagccaaatcacaaatcattcgtggccaagatgaagaaggtannnnnnnnnnnnnnnnnnn |
110 |
Q |
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| T |
21641852 |
aagattatgagaacacctatgagcctctcattcttgaagaagccaaatcacaaatcattggtggccaagatgaagaaggtatttttgtcttttacttttt |
21641753 |
T |
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| Q |
111 |
actaattagtaataataatttgtgaaaatgacataaatcaatgtaatttta |
161 |
Q |
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| T |
21641752 |
actaattagtaataataatttgtgaaaatgacataaatcaatgtaatttta |
21641702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 3921673 - 3921709
Alignment:
| Q |
121 |
aataataatttgtgaaaatgacataaatcaatgtaat |
157 |
Q |
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| T |
3921673 |
aataataatttgagaaaatgacataattcaatgtaat |
3921709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 40747825 - 40747789
Alignment:
| Q |
122 |
ataataatttgtgaaaatgacataaatcaatgtaatt |
158 |
Q |
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| T |
40747825 |
ataataatttgagaaaatgacataattcaatgtaatt |
40747789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 22210820 - 22210745
Alignment:
| Q |
11 |
aagaatatgagaacacctatgagcctctcattctagaagaagccaaatcacaaatcattcgtggccaagatgaaga |
86 |
Q |
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| T |
22210820 |
aagattatgagaacacctatgagcctctcattcttgaagaagccaaatcacaaatcattcgtggcaaagatgaaga |
22210745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 34201100 - 34201042
Alignment:
| Q |
120 |
taataataatttgtgaaaatgacataaatcaatgtaattttagtttatatgtgttggtgt |
179 |
Q |
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||||||||||||| ||||||||||||| ||||||||||| || | |||| |||||||||| |
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| T |
34201100 |
taataataatttgagaaaatgacataattcaatgtaattata-tgtataagtgttggtgt |
34201042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 40681989 - 40682025
Alignment:
| Q |
122 |
ataataatttgtgaaaatgacataaatcaatgtaatt |
158 |
Q |
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| T |
40681989 |
ataataatttgagaaaatgacataattcaatgtaatt |
40682025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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