View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14307_low_12 (Length: 549)

Name: NF14307_low_12
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14307_low_12
NF14307_low_12
[»] chr7 (3 HSPs)
chr7 (117-539)||(9638934-9639354)
chr7 (18-123)||(9638807-9638912)
chr7 (451-535)||(47992405-47992490)
[»] chr4 (3 HSPs)
chr4 (117-539)||(13597891-13598311)
chr4 (18-123)||(13598333-13598438)
chr4 (44-102)||(13437569-13437628)
[»] chr8 (2 HSPs)
chr8 (484-537)||(105448-105501)
chr8 (464-528)||(42192868-42192933)
[»] chr5 (1 HSPs)
chr5 (496-539)||(36308240-36308283)
[»] chr2 (1 HSPs)
chr2 (484-539)||(879494-879549)
[»] chr3 (2 HSPs)
chr3 (493-539)||(36925919-36925968)
chr3 (484-526)||(29214783-29214825)
[»] chr1 (2 HSPs)
chr1 (463-536)||(46946558-46946632)
chr1 (495-535)||(6790683-6790723)
[»] chr6 (1 HSPs)
chr6 (484-528)||(30438098-30438141)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 117 - 539
Target Start/End: Original strand, 9638934 - 9639354
Alignment:
Q  117 ataatattattatgttttgcgataaatctctaattatgtatttgacataataaattttgccactcgaatgtgttagaaaatgggattcggatcctctcgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  9638934 ataatattattatgttttgcgataaatctctaattatgtattttacataataaattttgccactcgaatgtgttagaaaatgggattcgaatcctctcat 9639033  T
Q  217 gtcaatcctctatagcgatttgtttgttatgtagtaattgcgaccgtttgatctatcatgcatatcagagagagaaagtaaaataaagttattaagtagt 316  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||| ||||    
T  9639034 gtcaatcctctatagcgatttgtttgttatgcggtaattgcgaccgtttgatctattacgcatatcagagagaaaaagtaaaataaagtaattaaatagt 9639133  T
Q  317 ctcaaccatttgaactaccgtaatgcgagatgatgtcatcacagacttgtgaaggaaatgatccgtgtcctcgaaaaagatgcaagggaaacacaatcac 416  Q
    ||||||||||||||||||||||||||||   |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9639134 ctcaaccatttgaactaccgtaatgcga---gatggcaacacagacttgtgaaggaaatgatccgtgtcctcgaaaaagatgcaagggaaacacaatcac 9639230  T
Q  417 aatacaataatataagtgtgatgttaacaaagtgtttaagagcatcgtttaaagaaactataaat-ataatattctcttgaaaacacaaatcaaacatat 515  Q
    ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||   ||||||||||||||||||||||||||||||||    
T  9639231 aatacaataatataagtgttatgttaacaaagtgtttaagagcgttgtttaaagaaaccataaatcgaaatattctcttgaaaacacaaatcaaacatat 9639330  T
Q  516 gaaaaagtaataaatacacatatt 539  Q
    ||||||||||||||||||||||||    
T  9639331 gaaaaagtaataaatacacatatt 9639354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 9638807 - 9638912
Alignment:
Q  18 gttacgatttcatggatgaagaacataaaagaattgtattaaagacatatattaaatggcactattcattggtttcgttcatgtatattgtgtgctttta 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  |||||||||||||    
T  9638807 gttacgatttcatggatgaagaacagaaaagaattgtattaaagacatatattagatggcactattcatttgtttcgttcatgtaatttgtgtgctttta 9638906  T
Q  118 taatat 123  Q
    ||||||    
T  9638907 taatat 9638912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 535
Target Start/End: Original strand, 47992405 - 47992490
Alignment:
Q  451 tttaagagcatcgtttaaagaaactataaatataa-tattctcttgaaaacacaaatcaaacatatgaaaaagtaataaatacaca 535  Q
    ||||||||||| |||||| ||||  |||||||||| |||||| ||||||||| || | ||| ||||||||||||||||||||||||    
T  47992405 tttaagagcattgtttaaggaaatcataaatataaatattcttttgaaaacataagttaaatatatgaaaaagtaataaatacaca 47992490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 117 - 539
Target Start/End: Complemental strand, 13598311 - 13597891
Alignment:
Q  117 ataatattattatgttttgcgataaatctctaattatgtatttgacataataaattttgccactcgaatgtgttagaaaatgggattcggatcctctcgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  13598311 ataatattattatgttttgcgataaatctctaattatgtattttacataataaattttgccactcgaatgtgttagaaaatgggattcgaatcctctcat 13598212  T
Q  217 gtcaatcctctatagcgatttgtttgttatgtagtaattgcgaccgtttgatctatcatgcatatcagagagagaaagtaaaataaagttattaagtagt 316  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||| ||||    
T  13598211 gtcaatcctctatagcgatttgtttgttatgcggtaattgcgaccgtttgatctattacgcatatcagagagaaaaagtaaaataaagtaattaaatagt 13598112  T
Q  317 ctcaaccatttgaactaccgtaatgcgagatgatgtcatcacagacttgtgaaggaaatgatccgtgtcctcgaaaaagatgcaagggaaacacaatcac 416  Q
    ||||||||||||||||||||||||||||   |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13598111 ctcaaccatttgaactaccgtaatgcga---gatggcaacacagacttgtgaaggaaatgatccgtgtcctcgaaaaagatgcaagggaaacacaatcac 13598015  T
Q  417 aatacaataatataagtgtgatgttaacaaagtgtttaagagcatcgtttaaagaaactataaat-ataatattctcttgaaaacacaaatcaaacatat 515  Q
    ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||   ||||||||||||||||||||||||||||||||    
T  13598014 aatacaataatataagtgttatgttaacaaagtgtttaagagcgttgtttaaagaaaccataaatcgaaatattctcttgaaaacacaaatcaaacatat 13597915  T
Q  516 gaaaaagtaataaatacacatatt 539  Q
    ||||||||||||||||||||||||    
T  13597914 gaaaaagtaataaatacacatatt 13597891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 13598438 - 13598333
Alignment:
Q  18 gttacgatttcatggatgaagaacataaaagaattgtattaaagacatatattaaatggcactattcattggtttcgttcatgtatattgtgtgctttta 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  |||||||||||||    
T  13598438 gttacgatttcatggatgaagaacagaaaagaattgtattaaagacatatattagatggcactattcatttgtttcgttcatgtaatttgtgtgctttta 13598339  T
Q  118 taatat 123  Q
    ||||||    
T  13598338 taatat 13598333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 13437569 - 13437628
Alignment:
Q  44 aaaagaattgtattaaagacatatattaaatggc-actattcattggtttcgttcatgta 102  Q
    ||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||    
T  13437569 aaaagaattgtataaaagacatatattagatggcaactattcattggttttgttcatgta 13437628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 484 - 537
Target Start/End: Complemental strand, 105501 - 105448
Alignment:
Q  484 aatattctcttgaaaacacaaatcaaacatatgaaaaagtaataaatacacata 537  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  105501 aatattctcttgaaaacacaagtcaaacatatgaaaaaataataaatacacata 105448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 528
Target Start/End: Complemental strand, 42192933 - 42192868
Alignment:
Q  464 tttaaagaaactataaatataa-tattctcttgaaaacacaaatcaaacatatgaaaaagtaataa 528  Q
    ||||||||||  |||||||||| |||| ||||||||| | || ||||| |||||||||||||||||    
T  42192933 tttaaagaaataataaatataaatattttcttgaaaatataagtcaaatatatgaaaaagtaataa 42192868  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 496 - 539
Target Start/End: Original strand, 36308240 - 36308283
Alignment:
Q  496 aaaacacaaatcaaacatatgaaaaagtaataaatacacatatt 539  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  36308240 aaaacacaaaccaaacatatgaaaaagtaataaatacacatatt 36308283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 539
Target Start/End: Original strand, 879494 - 879549
Alignment:
Q  484 aatattctcttgaaaacacaaatcaaacatatgaaaaagtaataaatacacatatt 539  Q
    |||||||| ||||||||| || |||||||||||||||||||||||  |||||||||    
T  879494 aatattcttttgaaaacataagtcaaacatatgaaaaagtaataatcacacatatt 879549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 36925919 - 36925968
Alignment:
Q  493 ttgaaaacacaaatcaaacatatgaaaa---agtaataaatacacatatt 539  Q
    |||||||||||| |||||||||||||||   |||||||||||||||||||    
T  36925919 ttgaaaacacaagtcaaacatatgaaaaaggagtaataaatacacatatt 36925968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 526
Target Start/End: Original strand, 29214783 - 29214825
Alignment:
Q  484 aatattctcttgaaaacacaaatcaaacatatgaaaaagtaat 526  Q
    |||||||||||||||||| || ||||| |||||||||||||||    
T  29214783 aatattctcttgaaaacataagtcaaatatatgaaaaagtaat 29214825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 536
Target Start/End: Complemental strand, 46946632 - 46946558
Alignment:
Q  463 gtttaaagaaactataaat-ataatattctcttgaaaacacaaatcaaacatatgaaaaagtaataaatacacat 536  Q
    |||||| |||||||||||  | ||||||||||| |||| ||||||  || ||||| |||||||||||||||||||    
T  46946632 gtttaaggaaactataaaagaaaatattctcttaaaaatacaaattgaatatatgtaaaagtaataaatacacat 46946558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 535
Target Start/End: Complemental strand, 6790723 - 6790683
Alignment:
Q  495 gaaaacacaaatcaaacatatgaaaaagtaataaatacaca 535  Q
    ||||| ||||||||||||||| |||||||||||| ||||||    
T  6790723 gaaaatacaaatcaaacatataaaaaagtaataattacaca 6790683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 528
Target Start/End: Complemental strand, 30438141 - 30438098
Alignment:
Q  484 aatattctcttgaaaacacaaatcaaacatatgaaaaagtaataa 528  Q
    |||||| |||||||| || ||||||||||||||||||||||||||    
T  30438141 aatattttcttgaaa-cataaatcaaacatatgaaaaagtaataa 30438098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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