View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_120 (Length: 217)
Name: NF14307_low_120
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_120 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 1459112 - 1458912
Alignment:
| Q |
16 |
atagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttaggagagcctact |
115 |
Q |
| |
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|||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
1459112 |
atagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacattctctcctttcttaggagagcctact |
1459013 |
T |
|
| Q |
116 |
tcaaagaaaccagcatacgcagtcattcccggcatacctgtactcaaacaaaaacacaacatatgtct---gagtcacaacaaaatggcagaaaactacg |
212 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| | | ||||||||| |||||||||||||||||| |
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| T |
1459012 |
tcaaagaaaccagcataagcagtcattccaggcatacctgtagtcaaacaaaaacacaacatatatgtcacgagtcacaatgaaatggcagaaaactacg |
1458913 |
T |
|
| Q |
213 |
c |
213 |
Q |
| |
|
| |
|
|
| T |
1458912 |
c |
1458912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 2428819 - 2428619
Alignment:
| Q |
16 |
atagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttaggagagcctact |
115 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
2428819 |
atagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacattctctcctttcttaggagagcctact |
2428720 |
T |
|
| Q |
116 |
tcaaagaaaccagcatacgcagtcattcccggcatacctgtactcaaacaaaaacacaacatatgtct---gagtcacaacaaaatggcagaaaactacg |
212 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| | | ||||||||| |||||||||||||||||| |
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| T |
2428719 |
tcaaagaaaccagcataagcagtcattccaggcatacctgtagtcaaacaaaaacacaacatatatgtcacgagtcacaatgaaatggcagaaaactacg |
2428620 |
T |
|
| Q |
213 |
c |
213 |
Q |
| |
|
| |
|
|
| T |
2428619 |
c |
2428619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 2517322 - 2517494
Alignment:
| Q |
7 |
tccaagaatatagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttagga |
106 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||| ||||||||||| |||||||||| || ||| |
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| T |
2517322 |
tccaacaacatagcaaccatgcaatttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgaaacaaaaacattctctccttttttcgga |
2517421 |
T |
|
| Q |
107 |
gagcctacttcaaagaaaccagcatacgcagtcattcccggcatacctgtactcaaacaaaaacacaacatat |
179 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||| |||| |
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| T |
2517422 |
gagcctacttcaaagaaaccagcataagcggtcattcctggcatacctgtgctcaaacaaaaacacaaaatat |
2517494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 2506359 - 2506515
Alignment:
| Q |
17 |
tagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttaggagagcctactt |
116 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||| | || |||||||| |
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| T |
2506359 |
tagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacattctctcctttcttggtagcgcctactt |
2506458 |
T |
|
| Q |
117 |
caaagaaaccagcatacgcagtcattcccggcatacctgtactcaaacaaaaacaca |
173 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||| |
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| T |
2506459 |
caaagaaaccagcataagcagtcattcctggcatacctgcactcaaagaaaaacaca |
2506515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 2512971 - 2513111
Alignment:
| Q |
16 |
atagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttaggagagcctact |
115 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| ||||||||||| ||||| |||| ||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
2512971 |
atagcaaccatgcaatttagcgaattggccaacaagttgaccaactgctccagaggcagctgaaacaaaaacattctctcctttcttgggagagcctact |
2513070 |
T |
|
| Q |
116 |
tcaaagaaaccagcatacgcagtcattcccggcatacctgt |
156 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||||||||| |
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|
| T |
2513071 |
tcaaagaaaccagaataagcagtcattcctggcatacctgt |
2513111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 2435195 - 2435034
Alignment:
| Q |
7 |
tccaagaatatagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttagga |
106 |
Q |
| |
|
||||| || ||| |||||||||| ||| |||||||| || ||||| |||||||| ||||| ||||||| ||||||| ||| ||||||||||||||||| |
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|
| T |
2435195 |
tccaacaacataacaaccatgcagttttgcaaattgacctacaagttgaccaacagcaccggatgcagctgaaacataaacattctctcctttcttagga |
2435096 |
T |
|
| Q |
107 |
gagcctacttcaaagaaaccagcatacgcagtcattcccggcatacctgtactcaaacaaaa |
168 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
2435095 |
ctgcctaattcaaagaaaccagcatatgcagtcattcccggcatacctgtactcaaacaaaa |
2435034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 2431805 - 2431644
Alignment:
| Q |
7 |
tccaagaatatagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttagga |
106 |
Q |
| |
|
||||| || ||| |||||||||||||| ||||||||||||||||| |||||||| |||| ||||| | ||||||| ||| | ||||||||||||||| |
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|
| T |
2431805 |
tccaacaacataacaaccatgcaattttgcaaattggccaacaagttgaccaacagcactggatgccgctgaaacataaacattttctcctttcttagga |
2431706 |
T |
|
| Q |
107 |
gagcctacttcaaagaaaccagcatacgcagtcattcccggcatacctgtactcaaacaaaa |
168 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||| |||| |||||||||||||||||||||| |
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|
| T |
2431705 |
ctgcctaattcaaagaaaccaacatatgcagtcaatcccagcatacctgtactcaaacaaaa |
2431644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 2497653 - 2497771
Alignment:
| Q |
38 |
aattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttaggagagcctacttcaaagaaaccagcatacgcag |
137 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||||||||||||||||| |||| |
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|
| T |
2497653 |
aattgaccaacaagttgaccgactgcaccagaggcagctgaaacaaaaacagtctctcctttcttaggactgcctagttcaaagaaaccagcataagcag |
2497752 |
T |
|
| Q |
138 |
tcattcccggcatacctgt |
156 |
Q |
| |
|
| ||||| ||||||||||| |
|
|
| T |
2497753 |
ttattcctggcatacctgt |
2497771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 946128 - 946207
Alignment:
| Q |
7 |
tccaagaatatagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaa |
86 |
Q |
| |
|
||||| || |||||||||||||||||| |||| ||| |||||||| ||||| || ||||| ||||| | ||||||||||| |
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|
| T |
946128 |
tccaacaacatagcaaccatgcaatttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaacaaaaa |
946207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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