View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_122 (Length: 210)
Name: NF14307_low_122
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_122 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 41362404 - 41362314
Alignment:
| Q |
110 |
cccaccaaaaccacaatggacgatgattcattggtcttatcctttttagttattttcaatctcatggaaacaatttgttattcttcatctc |
200 |
Q |
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| T |
41362404 |
cccaccaaaaccacaatggacgatgattcattggtcttatccttttttgttattttcaatctcatggaaacaatttgttattcttcatctc |
41362314 |
T |
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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 41362495 - 41362457
Alignment:
| Q |
18 |
aaattagagatcaacaaaaacaaaggatcctcgtcgtagc |
57 |
Q |
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| T |
41362495 |
aaattagagatcaacaaaaac-aaggatcctcgtcgtagc |
41362457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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