View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14307_low_123 (Length: 209)

Name: NF14307_low_123
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14307_low_123
NF14307_low_123
[»] chr4 (5 HSPs)
chr4 (72-191)||(41627703-41627822)
chr4 (80-164)||(7544568-7544654)
chr4 (119-164)||(20047586-20047632)
chr4 (108-149)||(48154921-48154962)
chr4 (117-160)||(47147528-47147572)
[»] chr7 (3 HSPs)
chr7 (122-164)||(45601627-45601670)
chr7 (108-165)||(29653620-29653678)
chr7 (122-165)||(43281981-43282025)
[»] chr6 (1 HSPs)
chr6 (123-164)||(10617323-10617365)
[»] chr2 (2 HSPs)
chr2 (119-164)||(19235069-19235115)
chr2 (121-164)||(43832249-43832293)
[»] chr8 (1 HSPs)
chr8 (109-164)||(2776337-2776393)
[»] chr1 (1 HSPs)
chr1 (109-164)||(15577569-15577625)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 41627703 - 41627822
Alignment:
Q  72 atggagtaggctacatggatcaaatatgccataatttatatcatgtatctatccaaatcattaatctctagatcttcttaatggtttctcttaccataaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41627703 atggagtaggctacatggatcaaatatgccataatttatatcatgtatctatccaaatcattaatctctagatcttcttaatggtttctcttaccataaa 41627802  T
Q  172 tgtttaagttatgacatctt 191  Q
    ||||||||||||||||||||    
T  41627803 tgtttaagttatgacatctt 41627822  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 7544568 - 7544654
Alignment:
Q  80 ggctacatggatcaaatatgccataat-ttatatcatgtatctatccaaatcattaatctctagatc-ttcttaatggtttctctta 164  Q
    |||||||||||||||||  || ||||| || |||||| | || ||| || ||||||||||||||||| |||||||| ||||||||||    
T  7544568 ggctacatggatcaaattcgctataatgttctatcatatttcgatcaaactcattaatctctagatctttcttaatagtttctctta 7544654  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 20047632 - 20047586
Alignment:
Q  119 tctatccaaatcattaatctctagatcttc-ttaatggtttctctta 164  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||||    
T  20047632 tctatccaactcattaatctctagatcttctttaatagtttctctta 20047586  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 48154921 - 48154962
Alignment:
Q  108 tatatcatgtatctatccaaatcattaatctctagatcttct 149  Q
    |||||||||| ||||||||| |||||||||||||||| ||||    
T  48154921 tatatcatgtttctatccaactcattaatctctagattttct 48154962  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 47147572 - 47147528
Alignment:
Q  117 tatctatccaaatcattaatctctagatc-ttcttaatggtttct 160  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||||    
T  47147572 tatctatccaactcattaatctctagatctttcttaatagtttct 47147528  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 45601670 - 45601627
Alignment:
Q  122 atccaaatcattaatctctagatc-ttcttaatggtttctctta 164  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  45601670 atccaactcattaatctctagatctttcttaatggtttctctta 45601627  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 29653620 - 29653678
Alignment:
Q  108 tatatcatgtatctatccaaatcattaatctctagatc-ttcttaatggtttctcttac 165  Q
    |||||||| | |||||| || ||||||||||||||||| |||||||| |||||||||||    
T  29653620 tatatcatatttctatctaactcattaatctctagatctttcttaatagtttctcttac 29653678  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 43282025 - 43281981
Alignment:
Q  122 atccaaatcattaatctctagatctt-cttaatggtttctcttac 165  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||    
T  43282025 atccaactcattaatctctagatcttacttaattgtttctcttac 43281981  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 10617323 - 10617365
Alignment:
Q  123 tccaaatcattaatctctagatc-ttcttaatggtttctctta 164  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  10617323 tccaactcattaatctctagatccttcttaatggtttctctta 10617365  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 19235069 - 19235115
Alignment:
Q  119 tctatccaaatcattaatctctagatc-ttcttaatggtttctctta 164  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  19235069 tctatccaaatcattaatctctagatctttctcaatagtttctctta 19235115  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 43832293 - 43832249
Alignment:
Q  121 tatccaaatcattaatctctagat-cttcttaatggtttctctta 164  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||||    
T  43832293 tatccaactcattaatctctagatccttcttaatagtttctctta 43832249  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 2776337 - 2776393
Alignment:
Q  109 atatcatgtatctatccaaatcattaatctctagatc-ttcttaatggtttctctta 164  Q
    ||||||| | |||||||||||||||||| |||||||| |||||||| |||| |||||    
T  2776337 atatcatatctctatccaaatcattaatatctagatcgttcttaatcgtttttctta 2776393  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 15577625 - 15577569
Alignment:
Q  109 atatcatgtatctatccaaatcattaatctctagat-cttcttaatggtttctctta 164  Q
    ||||||| | ||||||||| ||||||||||||| || ||||||||| ||||||||||    
T  15577625 atatcatatctctatccaactcattaatctctatatccttcttaatagtttctctta 15577569  T

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