View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14307_low_15 (Length: 541)
Name: NF14307_low_15
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_15 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 2 - 531
Target Start/End: Original strand, 18736030 - 18736559
Alignment:
| Q |
2 |
tggacttgaagctggaatatggccaagcaaggaaaagacattgtgtgtttcttgtggggacttggatgtggaattctattctacaaaagacactggaaaa |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18736030 |
tggatttgaagctggaatatggccaagcaaggaaaagacattgtgtgtttcttgtggggacttggatgtggaattctattctacaaaagacactggaaaa |
18736129 |
T |
|
| Q |
102 |
ctattgggtattgggaagaactgcaacgtagttgaagccaaaccatagttagctattgaagattgattaattataagtggaatattagcataatctaacg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18736130 |
ctattgggtattgggaagaactgcaacgtagttgaagccaaaccatagttagctattgaagattgattaattataagtggaatattagcataatctaacg |
18736229 |
T |
|
| Q |
202 |
ctctttttagtttttacacaccactactctttatcttattgaataaaatgtatgtgagattgttggaaatcaagcgagtgtttaagtcccacatcgacta |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18736230 |
ctctttttagtttttacacaccactactctttatcttattgaataaaatgtttgtaagattgttggaaatcaagcgagtgcttaagtcccacatcgacta |
18736329 |
T |
|
| Q |
302 |
caaagtgatgaaaatgttggatatactaaatagacggtccacacacctaatgtcttaagatttttggtaaatatatgatgttaaggtctcgtaggagttc |
401 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | |
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|
| T |
18736330 |
caaaatgatgaaaatgttggatatactaaatagacggtccacacacctaatgtcttaaggtttttggtaaatatatggtgttaaggtctcgtaggagtcc |
18736429 |
T |
|
| Q |
402 |
tatacgtttcgctaattgttgcttcttggagtccgcaacaaagatccttcaaatcatataggttttactttttctttgattgaattaatataaattttaa |
501 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18736430 |
tatacgtttcgctaattgttgcttcttagagtccgcaacaaagatccttcaaatcatataggttttactttttctttgattgaattaatataaattttaa |
18736529 |
T |
|
| Q |
502 |
attaatatttaagagcgtgtagatatcatg |
531 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
|
|
| T |
18736530 |
attaatatttaagagcgtctagatatcatg |
18736559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 2 - 531
Target Start/End: Original strand, 18669709 - 18670238
Alignment:
| Q |
2 |
tggacttgaagctggaatatggccaagcaaggaaaagacattgtgtgtttcttgtggggacttggatgtggaattctattctacaaaagacactggaaaa |
101 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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|
| T |
18669709 |
tggatttgaagctggaatatggccaagcaaggaaaagacattgtgtgtttcttgtggggacttggatgtggaattatattctacaaaaaacactggaaaa |
18669808 |
T |
|
| Q |
102 |
ctattgggtattgggaagaactgcaacgtagttgaagccaaaccatagttagctattgaagattgattaattataagtggaatattagcataatctaacg |
201 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18669809 |
ttattgggtattgggaagaactgcaacatagttgaagcaaaaccatagttagatattgaagattgattaattataagtggaatattagcataatctaacg |
18669908 |
T |
|
| Q |
202 |
ctctttttagtttttacacaccactactctttatcttattgaataaaatgtatgtgagattgttggaaatcaagcgagtgtttaagtcccacatcgacta |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
18669909 |
ctctttttagtttttacacaccactactctttatcttattgaataaaatgtatgtgagattgttggaaatcaagcgagtgcttaagtcccacatcgacta |
18670008 |
T |
|
| Q |
302 |
caaagtgatgaaaatgttggatatactaaatagacggtccacacacctaatgtcttaagatttttggtaaatatatgatgttaaggtctcgtaggagttc |
401 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
18670009 |
caaaatgatgaaaatgttggatatactaaatagacggtccacacacctaatgtcttaaggtttttggtaaatatatggtgttaaggtctcgtaggagtcc |
18670108 |
T |
|
| Q |
402 |
tatacgtttcgctaattgttgcttcttggagtccgcaacaaagatccttcaaatcatataggttttactttttctttgattgaattaatataaattttaa |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18670109 |
tatacgtttcgctaattgttgcttcttggagtccgcaacaatgatccttcaaatcatataggttttactttttctttgattgaattaatagaaattttaa |
18670208 |
T |
|
| Q |
502 |
attaatatttaagagcgtgtagatatcatg |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18670209 |
attaatatttaagagcgtgtagatatcatg |
18670238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 2 - 531
Target Start/End: Original strand, 18647730 - 18648262
Alignment:
| Q |
2 |
tggacttgaagctggaatatggccaagcaaggaaaagacattgtgtgtttcttgtggggacttggatgtggaattctattctacaaaagacactggaaaa |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18647730 |
tggatttgaagctggaatatggccaagcaaggaaaagacattgtgtgtttcttgtggggacttggatgtggaattctattctacaaaagacactggaaaa |
18647829 |
T |
|
| Q |
102 |
ctattgggtattgggaagaactgcaacgtagttgaagccaaacca----tagttagctattgaagattgattaattataagtggaatattagcataatct |
197 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
18647830 |
ctattgggtattgggaagaactgcaacatagttgaagctaaaccatagttagttagttattgaagattgcttaattataagtggaatgttagcataatct |
18647929 |
T |
|
| Q |
198 |
aacgctctttttagtttttacacaccactactctttatcttattgaataaaatgtatgtgagattgttggaaatcaagcgagtgtttaagtcccacatcg |
297 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||| | |||||||| |
|
|
| T |
18647930 |
aacgctatttttagtttttacacaccactactctttatcttattgaataaaatgtacgtgaaattgttagaaatcaagcgagtggttatattccacatcg |
18648029 |
T |
|
| Q |
298 |
actacaaagtgatgaaaatgttggatatactaaatagacggtccacacacctaatgtcttaagatttttggtaaatatatgatgttaaggtctcgtagga |
397 |
Q |
| |
|
||| ||| || |||||||| ||||||| || ||||||||||| ||||||| |||||| || ||||||| |||||| || ||||||||||| ||| | |
|
|
| T |
18648030 |
acttgaaa-tggagaaaatgtcggatataatagatagacggtccgtacacctagtgtctttaggtttttgggaaatatgtggtgttaaggtcttgtacca |
18648128 |
T |
|
| Q |
398 |
gttctatacgtttcgctaattgttgcttcttggagtccgcaacaaagatccttcaaatcatataggttttactttttctttgattgaattaatataaatt |
497 |
Q |
| |
|
|| || |||||| | ||| || |||||| || || |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
18648129 |
gtcctggacgtttagttaactgccgcttctaagactctgcaacaaagatccttcaaatcatataggttttaccttttctttgattgaattcatataaatt |
18648228 |
T |
|
| Q |
498 |
ttaaattaatatttaagagcgtgtagatatcatg |
531 |
Q |
| |
|
||| |||||||||| |||| ||||| |||||||| |
|
|
| T |
18648229 |
ttacattaatatttgagagtgtgtaaatatcatg |
18648262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 2 - 446
Target Start/End: Original strand, 18708560 - 18709003
Alignment:
| Q |
2 |
tggacttgaagctggaatatggccaagcaaggaaaagacattgtgtgtttcttgtggggacttggatgtggaattctattctacaaaagacactggaaaa |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18708560 |
tggatttgaagctggaatatggccaagcaaggaaaagacattgtgtgtttcttgtggggacttggatgtggaattctattctacaaaagacactggaaaa |
18708659 |
T |
|
| Q |
102 |
ctattgggtattgggaagaactgcaacgtagttgaagccaaaccatagttagctattgaagattgattaattataagtggaatattagcataatctaacg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18708660 |
ctattgggtattgggaagaactgcaacgtagttgaagccaaaccatagttagctattgaagattgattaattataagtggaatattagcataatctaacg |
18708759 |
T |
|
| Q |
202 |
ctctttttagtttttacacaccactactctttatcttattgaataaaatgtatgtgagattgttggaaatcaagcgagtgtttaagtcccacatcgacta |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| | |||| |||||| |
|
|
| T |
18708760 |
ctctttttagtttttacacaccactactctttatcttattgaataaaatgtacgtgaaattgttggaaatcaagcgagtggttatattccacctcgactt |
18708859 |
T |
|
| Q |
302 |
caaagtgatgaaaatgttggatatactaaatagacggtccacacacctaatgtcttaagatttttggtaaatatatgatgttaaggtctcgtaggagttc |
401 |
Q |
| |
|
||| || |||||||| ||||||| || ||||||||||| ||||||| |||||| || ||||||| |||||| || ||||||||||| ||| ||| | |
|
|
| T |
18708860 |
gaaatgga-gaaaatgtcggatatattagatagacggtccgtacacctagtgtcttgaggtttttgggaaatatgtggtgttaaggtcttgtaccagtcc |
18708958 |
T |
|
| Q |
402 |
tatacgtttcgctaattgttgcttcttggagtccgcaacaaagat |
446 |
Q |
| |
|
| |||||| | |||||| |||||| || || ||||||||||| |
|
|
| T |
18708959 |
tggacgtttagttaattgccgcttctaagactctgcaacaaagat |
18709003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 181 - 531
Target Start/End: Original strand, 18715670 - 18716021
Alignment:
| Q |
181 |
gaatattagcataatctaacgctctttttagtttttacacaccactactctttatcttattgaataaaatgtatgtgagattgttggaaatcaagcgagt |
280 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18715670 |
gaatattagcataatctaacgccctttttagtttttacacgccagtactctttatcttattgaataaaatgtatgtgagattgttggaaatcaagtgagt |
18715769 |
T |
|
| Q |
281 |
gtttaagtcccacatcgactacaaagtgatgaaaatgttggatatactaaatagacggtccacacacctaatgtcttaagatttttggtaaatatatgat |
380 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| | |
|
|
| T |
18715770 |
acttaagtcccacatcgactacaaaatgatgaaaatgttggatatactaaatagacggtccacacacttaatgtcttaaggtttttgttaaatatatggt |
18715869 |
T |
|
| Q |
381 |
gttaaggtctcgtaggagttctatacgtttcgctaattgttgcttcttggagtccgcaacaaagatccttcaaatcatataggttttactttttctttga |
480 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18715870 |
gttaaggtctcgtaggagtcctatacgtttcgctaattgtagcttcttggagtccgcaacaaagatccttcaaatcatataggttttactttttctatga |
18715969 |
T |
|
| Q |
481 |
ttgaattaatat-aaattttaaattaatatttaagagcgtgtagatatcatg |
531 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18715970 |
ttgaattaatataaaattttaaattaatatttaagagcgtgtagatatcatg |
18716021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 922410 - 922450
Alignment:
| Q |
261 |
ttgttggaaatcaagcgagtgtttaagtcccacatcgacta |
301 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
922410 |
ttgttggaaatcaagtgagtgtttatgtcccacatcgacta |
922450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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