View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_16 (Length: 539)
Name: NF14307_low_16
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 10784876 - 10785141
Alignment:
| Q |
1 |
tgaaaccaccgtaactgaattgaaaggcactgtaactaactttgaaccaccgtaactgactttgatnnnnnnnnnnnnnnnnntcaaacaaaactgcgtt |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10784876 |
tgaaaccaccgtaactaaattgaaaggcactgtaactaactctgaaccaccgtaactgactttgattctctctttctctctcttcaaacaaaactgcgtt |
10784975 |
T |
|
| Q |
101 |
tttcttttgaagtgagagagaaatcagggcccttctaagctcctgataccacttgtaaagttggcaaaacaacac--tgctttttattgaatgaaataac |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| |
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| T |
10784976 |
tttcttttgaagtgagagagaaatcagggcccttctaagctcctgataccacttgtaaagttggcaaaacaacactatattctttattgaatgaaat--- |
10785072 |
T |
|
| Q |
199 |
tggctatatatagccattatttacactgcctagttatacaagtaacactagacaactacttattccttaca |
269 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10785073 |
tggc--tatatagccattatttacactgcctagttatacaagtaacactagactactacttattccttaca |
10785141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 270 - 499
Target Start/End: Complemental strand, 15308138 - 15307903
Alignment:
| Q |
270 |
ttttgcactcgttaagtaatgtgaaaatacataataatttaatataaatgtaaacttttttcacattgatgatgtatatcaattaaactcttttaaataa |
369 |
Q |
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| T |
15308138 |
ttttgcactcgttaaataatgtgagaatacataataatt-aacataaatgtaacctttt--cacgtcggcgatgtatatcaattaaactcttttaaataa |
15308042 |
T |
|
| Q |
370 |
gtggtatatattatcacttttccctcaaaaataatattatcacttttgcagatattttaccatatcttattcatccttttg---------agttttaaca |
460 |
Q |
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| T |
15308041 |
gtggtatatattatcacttttccctcaaaaataatattatcacttttgcagatattttaccatatcttattcatccttttgtagttttaacgttttaaca |
15307942 |
T |
|
| Q |
461 |
tgtaatttgtaatatgacaatttgcatgaaagaatatct |
499 |
Q |
| |
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| T |
15307941 |
tgtaatttgtaatatgacaatttgcatgaatgaatatct |
15307903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 154 - 269
Target Start/End: Original strand, 10780682 - 10780796
Alignment:
| Q |
154 |
tgtaaagttggcaaaacaacactgcttt--ttattgaatgaaataactggctatatatagccattatttacactgcctagttatacaagtaacactagac |
251 |
Q |
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||||||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10780682 |
tgtaaagttggcaaaacaacactatattctttattgaatgaaa---ctggctatatatagtcattatttacactgcctagttatacaagtaacactagac |
10780778 |
T |
|
| Q |
252 |
aactacttattccttaca |
269 |
Q |
| |
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||||||||||||||||| |
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| T |
10780779 |
tactacttattccttaca |
10780796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 29945814 - 29945898
Alignment:
| Q |
84 |
tcaaacaaaactgcgtttttcttttgaagtgagagagaaatcagggcccttctaagctcctgataccacttgtaaagttggcaaa |
168 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
29945814 |
tcaaacaaaactgcgtttttcttttgaagtgagagataaatcagggcccttctaagctcctaataccacttgttaagttggcaaa |
29945898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 158 - 265
Target Start/End: Complemental strand, 38065280 - 38065175
Alignment:
| Q |
158 |
aagttggcaaaacaacact--gctttttattgaatgaaataactggctatatatagccattatttacactgcctagttatacaagtaacactagacaact |
255 |
Q |
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||||||||||||||||||| | | |||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||| |
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| T |
38065280 |
aagttggcaaaacaacacttagttctttattgaatgaaa---ctggctatat-tagccattatttacactgccttattatacaagtaacacaagactact |
38065185 |
T |
|
| Q |
256 |
acttattcct |
265 |
Q |
| |
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|||||||||| |
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| T |
38065184 |
acttattcct |
38065175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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