View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14307_low_18 (Length: 524)

Name: NF14307_low_18
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14307_low_18
NF14307_low_18
[»] scaffold0330 (2 HSPs)
scaffold0330 (270-505)||(19237-19472)
scaffold0330 (22-199)||(19009-19183)
[»] scaffold0240 (2 HSPs)
scaffold0240 (270-505)||(3255-3490)
scaffold0240 (22-199)||(3027-3201)
[»] chr8 (9 HSPs)
chr8 (126-188)||(4239159-4239221)
chr8 (126-188)||(23082691-23082753)
chr8 (138-199)||(34117576-34117637)
chr8 (124-188)||(17025064-17025125)
chr8 (124-188)||(17555556-17555617)
chr8 (124-169)||(8319457-8319502)
chr8 (124-173)||(38183137-38183186)
chr8 (135-188)||(40126709-40126762)
chr8 (278-322)||(23549245-23549289)
[»] chr5 (8 HSPs)
chr5 (126-188)||(36938332-36938394)
chr5 (126-188)||(42000620-42000682)
chr5 (125-181)||(36427581-36427637)
chr5 (124-199)||(23978217-23978291)
chr5 (135-199)||(560662-560727)
chr5 (135-178)||(26671214-26671257)
chr5 (135-178)||(26942811-26942854)
chr5 (124-158)||(23978296-23978330)
[»] chr3 (10 HSPs)
chr3 (126-188)||(8887120-8887182)
chr3 (128-199)||(6607533-6607603)
chr3 (124-169)||(24755329-24755374)
chr3 (124-169)||(24764326-24764371)
chr3 (119-188)||(18471135-18471201)
chr3 (135-199)||(20506709-20506773)
chr3 (135-197)||(7572053-7572116)
chr3 (278-333)||(8887262-8887317)
chr3 (135-190)||(23662242-23662296)
chr3 (136-188)||(38193687-38193739)
[»] chr2 (8 HSPs)
chr2 (135-199)||(9181537-9181601)
chr2 (135-188)||(17971495-17971548)
chr2 (135-188)||(30650125-30650178)
chr2 (124-199)||(15444945-15445020)
chr2 (126-175)||(30654819-30654868)
chr2 (133-188)||(25479687-25479742)
chr2 (133-188)||(25487293-25487348)
chr2 (140-196)||(30616800-30616856)
[»] chr4 (7 HSPs)
chr4 (124-199)||(41815927-41816001)
chr4 (124-199)||(16952776-16952851)
chr4 (124-181)||(32221979-32222036)
chr4 (135-188)||(37260695-37260748)
chr4 (124-167)||(33465147-33465190)
chr4 (135-188)||(31272691-31272744)
chr4 (278-322)||(41816070-41816114)
[»] chr1 (4 HSPs)
chr1 (137-199)||(47452969-47453031)
chr1 (135-186)||(10139240-10139291)
chr1 (135-188)||(25854341-25854394)
chr1 (137-188)||(16749569-16749621)
[»] scaffold0060 (1 HSPs)
scaffold0060 (124-169)||(48849-48894)
[»] chr7 (1 HSPs)
chr7 (124-199)||(10389146-10389221)
[»] scaffold0045 (1 HSPs)
scaffold0045 (128-199)||(82257-82327)
[»] chr6 (2 HSPs)
chr6 (124-199)||(15992610-15992684)
chr6 (124-199)||(16000272-16000346)


Alignment Details
Target: scaffold0330 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 270 - 505
Target Start/End: Original strand, 19237 - 19472
Alignment:
Q  270 tcatctttatcttattcagcagaaatttgaaattcgaattctttcttattttttgagtagctaacttctaagttttagcacttcctatcgaactaaaatc 369  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19237 tcatctttatcttattcagtagaaatctgaaattcgaattctttcttattttttgagtagctaacttctaagttttagcactccctatcgaactaaaatc 19336  T
Q  370 atcctagttcctttaaccgattaaccaagggaacaaatttaagaatattaaatttgcgcatttttccaaatggttattttagaatagtatagaacaatgc 469  Q
    |||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19337 atcctaattcctttaaccgattaaccaagggcccaaatttaagaatattaaatttgcgcatttttccaaatggttattttagaatagtatagaacaatgc 19436  T
Q  470 actaaagtaacaaccgaatccatctcaactaattgc 505  Q
    ||||||||||||||||||||||||||||||||||||    
T  19437 actaaagtaacaaccgaatccatctcaactaattgc 19472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 19009 - 19183
Alignment:
Q  22 cagaaatagcggcaataaaggcggaagggtgatatgtagtagttatatacacagatcgggatgatttcaggataaactctttcgggataaatatcattat 121  Q
    ||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  19009 cagaaatggcggcaataaaggcggaagggtgatatgtag---ttatatacacagatcgggatgatttcgggataaactctttcggtataaatatcattat 19105  T
Q  122 cctaaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||    
T  19106 cctaaattttgatatgtcaaatattaaaatcacacaacttataaaatagaaggaaaattttaattttgaacataccat 19183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 270 - 505
Target Start/End: Original strand, 3255 - 3490
Alignment:
Q  270 tcatctttatcttattcagcagaaatttgaaattcgaattctttcttattttttgagtagctaacttctaagttttagcacttcctatcgaactaaaatc 369  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3255 tcatctttatcttattcagtagaaatctgaaattcgaattctttcttattttttgagtagctaacttctaagttttagcactccctatcgaactaaaatc 3354  T
Q  370 atcctagttcctttaaccgattaaccaagggaacaaatttaagaatattaaatttgcgcatttttccaaatggttattttagaatagtatagaacaatgc 469  Q
    |||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3355 atcctaattcctttaaccgattaaccaagggcccaaatttaagaatattaaatttgcgcatttttccaaatggttattttagaatagtatagaacaatgc 3454  T
Q  470 actaaagtaacaaccgaatccatctcaactaattgc 505  Q
    ||||||||||||||||||||||||||||||||||||    
T  3455 actaaagtaacaaccgaatccatctcaactaattgc 3490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 3027 - 3201
Alignment:
Q  22 cagaaatagcggcaataaaggcggaagggtgatatgtagtagttatatacacagatcgggatgatttcaggataaactctttcgggataaatatcattat 121  Q
    ||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  3027 cagaaatggcggcaataaaggcggaagggtgatatgtag---ttatatacacagatcgggatgatttcgggataaactctttcggtataaatatcattat 3123  T
Q  122 cctaaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||    
T  3124 cctaaattttgatatgtcaaatattaaaatcacacaacttataaaatagaaggaaaattttaattttgaacataccat 3201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 4239221 - 4239159
Alignment:
Q  126 aattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  4239221 aattttgatatgtcaaatattaaaatcacacaactaataaaatagaaggagaattttaatttt 4239159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 23082753 - 23082691
Alignment:
Q  126 aattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  23082753 aattttgatatgtcaaatattaaaatcacacaactaataaaatagaaggagaattttaatttt 23082691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 34117576 - 34117637
Alignment:
Q  138 tcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||| || |||||||    
T  34117576 tcaaatattaaaatcacacaactaataaaatagaaggagaattttaattttgaacataccat 34117637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 17025064 - 17025125
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    ||||||||||||||||||||||||||||||||||| || |||   ||||||||||||||||||||    
T  17025064 taaattttgatatgtcaaatattaaaatcacacaacttgtaa---agaaggagaattttaatttt 17025125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 17555556 - 17555617
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    ||||||||||||||||||||||||||||||||||| || |||   ||||||||||||||||||||    
T  17555556 taaattttgatatgtcaaatattaaaatcacacaacttgtaa---agaaggagaattttaatttt 17555617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 8319502 - 8319457
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaata 169  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  8319502 taaattttgatatgtcaaatattaaaatcacacaacttataaaata 8319457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 38183186 - 38183137
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaatagaag 173  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  38183186 taaattttgatatgtcaaatattaaaatcacacaactaataaaatagaag 38183137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 40126762 - 40126709
Alignment:
Q  135 atgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    |||||||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  40126762 atgtcaaatattaaaatcacacaactaataaaatagaaggagaaatttaatttt 40126709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 23549289 - 23549245
Alignment:
Q  278 atcttattcagcagaaatttgaaattcgaattctttcttattttt 322  Q
    ||||||||||| | |||||||||||||  ||||||||||||||||    
T  23549289 atcttattcagtataaatttgaaattcagattctttcttattttt 23549245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 36938394 - 36938332
Alignment:
Q  126 aattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  36938394 aattttgatatgtcaaatattaaaatcacacaactaataaaatagaaggagaattttaatttt 36938332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 42000620 - 42000682
Alignment:
Q  126 aattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  42000620 aattttgatatgtcaaatattaaaatcacacaactaataaaatagaaggagaattttaatttt 42000682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 36427581 - 36427637
Alignment:
Q  125 aaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattt 181  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  36427581 aaattttgatatgtcaaatattaaaatcacacaactaataaaatagaaggaaaattt 36427637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 23978291 - 23978217
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    |||||||||||||||||||||||||||||||| ||   |||||||| ||| |||| |||||||||||| |||||||    
T  23978291 taaattttgatatgtcaaatattaaaatcacaaaacaaataaaatataagaagaa-tttaattttaaacataccat 23978217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 560662 - 560727
Alignment:
Q  135 atgtcaaatattaaaa-tcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    |||||||||||||||| |||||||| | |||||||||||||||| |||||||||| || |||||||    
T  560662 atgtcaaatattaaaaatcacacaactaataaaatagaaggagatttttaattttgaacataccat 560727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 26671214 - 26671257
Alignment:
Q  135 atgtcaaatattaaaatcacacaatttataaaatagaaggagaa 178  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  26671214 atgtcaaatattaaaatcacacaactaataaaatagaaggagaa 26671257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 26942811 - 26942854
Alignment:
Q  135 atgtcaaatattaaaatcacacaatttataaaatagaaggagaa 178  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  26942811 atgtcaaatattaaaatcacacaactaataaaatagaaggagaa 26942854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 23978330 - 23978296
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaa 158  Q
    |||||||||||||||||||||||||||||||||||    
T  23978330 taaattttgatatgtcaaatattaaaatcacacaa 23978296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 8887120 - 8887182
Alignment:
Q  126 aattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  8887120 aattttgatatgtcaaatattaaaatcacacaactaataaaatagaaggagaattttaatttt 8887182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 6607603 - 6607533
Alignment:
Q  128 ttttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| || |||||||    
T  6607603 ttttgatatgtcaaatattaaaatcacacaacttataaaatataaggagaa-tttaattttgaacataccat 6607533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 24755374 - 24755329
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaata 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24755374 taaattttgatatgtcaaatattaaaatcacacaatttataaaata 24755329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 24764371 - 24764326
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaata 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24764371 taaattttgatatgtcaaatattaaaatcacacaatttataaaata 24764326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 18471135 - 18471201
Alignment:
Q  119 tatcctaaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    |||| ||||||||||||||||||||||||||||||||||| || |||   ||||||||||||||||||||    
T  18471135 tatcataaattttgatatgtcaaatattaaaatcacacaacttgtaa---agaaggagaattttaatttt 18471201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 20506709 - 20506773
Alignment:
Q  135 atgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    |||||||||||||||||| ||| | |||||||| ||| |||||||||||||||| ||||||||||    
T  20506709 atgtcaaatattaaaatctcacgacttataaaacagagggagaattttaattttgaatataccat 20506773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 7572116 - 7572053
Alignment:
Q  135 atgtcaaatattaaaatcacacaatttataaaa-tagaaggagaattttaattttaaatatacc 197  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||||||||||| || |||||    
T  7572116 atgtcaaatattaaaatcacacaactaataaaattagaaggagaattttaattttgaacatacc 7572053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 8887262 - 8887317
Alignment:
Q  278 atcttattcagcagaaatttgaaattcgaattctttcttattttttgagtagctaa 333  Q
    ||||||||||  |||||| |||||||| ||||||||||||||||| ||||| ||||    
T  8887262 atcttattcaatagaaatctgaaattcaaattctttcttatttttagagtaactaa 8887317  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 23662296 - 23662242
Alignment:
Q  135 atgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaa 190  Q
    |||| ||||||||||||||||||| | | ||||||||||||||| |||||||||||    
T  23662296 atgtgaaatattaaaatcacacaactaacaaaatagaaggagaa-tttaattttaa 23662242  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 38193739 - 38193687
Alignment:
Q  136 tgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    |||||||||||||||||||| || || ||||| | | ||||||||||||||||    
T  38193739 tgtcaaatattaaaatcacataaattgtaaaacaaagggagaattttaatttt 38193687  T

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Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 9181601 - 9181537
Alignment:
Q  135 atgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||| || |||||||    
T  9181601 atgtcaaatattaaaatcacacaactaataaaatagaaggagaattttaattttgaacataccat 9181537  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 17971548 - 17971495
Alignment:
Q  135 atgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  17971548 atgtcaaatattaaaatcacacaactaataaaatagaaggagaattttaatttt 17971495  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 30650125 - 30650178
Alignment:
Q  135 atgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  30650125 atgtcaaatattaaaatcacacaactaataaaatagaaggagaattttaatttt 30650178  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 15445020 - 15444945
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    |||||||| | ||||||||||||| |||||||||| |||||| | |||||||||||||||||||| || |||||||    
T  15445020 taaatttttacatgtcaaatattacaatcacacaacttataatacagaaggagaattttaattttgaacataccat 15444945  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 30654819 - 30654868
Alignment:
Q  126 aattttgatatgtcaaatattaaaatcacacaatttataaaatagaagga 175  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  30654819 aattttgatatgtcaaatattaaaatcacacaactaataaaatagaagga 30654868  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 25479742 - 25479687
Alignment:
Q  133 atatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    |||||||||||||||||||||||||| | |||||||| ||| | ||||||||||||    
T  25479742 atatgtcaaatattaaaatcacacaactaataaaataaaagaaaaattttaatttt 25479687  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 25487348 - 25487293
Alignment:
Q  133 atatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    |||||||||||||||||||||||||| | |||||||| ||| | ||||||||||||    
T  25487348 atatgtcaaatattaaaatcacacaactaataaaataaaagaaaaattttaatttt 25487293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 30616800 - 30616856
Alignment:
Q  140 aaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatatac 196  Q
    ||||||||||||||||||| || ||||| | |||||||||||| ||||| |||||||    
T  30616800 aaatattaaaatcacacaaattgtaaaacaaaaggagaattttgattttgaatatac 30616856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 41815927 - 41816001
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||| ||||||||| || |||||||    
T  41815927 taaatttcgatatgtcaaatattaaaaacacacaacttataaaatataaggagaa-tttaattttgaacataccat 41816001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 16952776 - 16952851
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    |||||||||  |||||||||| ||||||||||||| |||||||| |||| |||| |||||||||| || |||||||    
T  16952776 taaattttggcatgtcaaatactaaaatcacacaacttataaaacagaaagagatttttaattttgaacataccat 16952851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 32222036 - 32221979
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattt 181  Q
    ||||||||||||| ||||| |||||||||||| || | ||||||||||||||||||||    
T  32222036 taaattttgatatatcaaaaattaaaatcacataactaataaaatagaaggagaattt 32221979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 37260748 - 37260695
Alignment:
Q  135 atgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    ||||||||||||||||||||| || | || ||||||||||||||||||||||||    
T  37260748 atgtcaaatattaaaatcacaaaactaatcaaatagaaggagaattttaatttt 37260695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 33465190 - 33465147
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaa 167  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  33465190 taaattttgatatgtcaaatattaaaatcacacaacttttaaaa 33465147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 31272691 - 31272744
Alignment:
Q  135 atgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    |||| |||||||||||||||| || | ||||||||||| |||||||||||||||    
T  31272691 atgtgaaatattaaaatcacaaaactaataaaatagaaagagaattttaatttt 31272744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 41816070 - 41816114
Alignment:
Q  278 atcttattcagcagaaatttgaaattcgaattctttcttattttt 322  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||    
T  41816070 atcttattcagtagaaatctgaaattcaaattctttcttattttt 41816114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 47453031 - 47452969
Alignment:
Q  137 gtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||| | || |||||||    
T  47453031 gtcaaatattaaaatcacacaactaataaaatagaaggagaattttaattctgaacataccat 47452969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 10139240 - 10139291
Alignment:
Q  135 atgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatt 186  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||    
T  10139240 atgtcaaatattaaaatcacacaactaataaaataaaaggagaattttaatt 10139291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 25854341 - 25854394
Alignment:
Q  135 atgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaatttt 188  Q
    |||||||||||||||||||||||| | |  ||||||||| ||||||||||||||    
T  25854341 atgtcaaatattaaaatcacacaactaacgaaatagaagtagaattttaatttt 25854394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 16749621 - 16749569
Alignment:
Q  137 gtcaaatattaaaat-cacacaatttataaaatagaaggagaattttaatttt 188  Q
    ||||||||||||||  | ||||| | |||||||||||||||||||||||||||    
T  16749621 gtcaaatattaaaaaacccacaactaataaaatagaaggagaattttaatttt 16749569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 48894 - 48849
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaata 169  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  48894 taaattttgatatgtcaaatattaaaatcacacaacttataaaata 48849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 10389221 - 10389146
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    |||||||||||||| |||||||| |||||||| |||||||||  || ||| |||||||||||||| || |||||||    
T  10389221 taaattttgatatgacaaatatttaaatcacaaaatttataacttaaaagaagaattttaattttgaacataccat 10389146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 82257 - 82327
Alignment:
Q  128 ttttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    ||||||||||||||||||||||||||||||| ||| ||| |  |||||||| ||||||||| || |||||||    
T  82257 ttttgatatgtcaaatattaaaatcacacaacttagaaagtttaaggagaa-tttaattttgaacataccat 82327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 15992684 - 15992610
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    |||||||||| ||||||| | |||||||||||||| ||  |||||||||||| || ||||||||| ||||| ||||    
T  15992684 taaattttgacatgtcaattgttaaaatcacacaacttgaaaaatagaaggataa-tttaattttgaatatgccat 15992610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 16000346 - 16000272
Alignment:
Q  124 taaattttgatatgtcaaatattaaaatcacacaatttataaaatagaaggagaattttaattttaaatataccat 199  Q
    |||||||||| ||||||| | |||||||||||||| ||  |||||||||||| || ||||||||| ||||| ||||    
T  16000346 taaattttgacatgtcaattgttaaaatcacacaacttgaaaaatagaaggataa-tttaattttgaatatgccat 16000272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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