View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_26 (Length: 485)
Name: NF14307_low_26
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 26856076 - 26856538
Alignment:
| Q |
19 |
atcgaccgcattaatcggcgatgcatgtggaattggcggtgttttagcatttgaagcaggaaaacaaggagaaataaaatcagataattctctgtggttc |
118 |
Q |
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| T |
26856076 |
atcgaccgcgttaatcggcgatgcatttggaattggtggtgttttagcatttgaagcgggaagacaaggagaaataaaatcagagaattctttgtggttc |
26856175 |
T |
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| Q |
119 |
atgatttctgttgtagttgtggcaatacttttattttgctgtattaggccaacaatgatgtggattaatagaaaaacaccagaaggagaagaagtggatc |
218 |
Q |
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| T |
26856176 |
atgatttctgttgtagttgtggcaatacttttactttgttgtattaggccaacaatgatgtggattaatagaaaaacaccagaaggacaagaagtggatc |
26856275 |
T |
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| Q |
219 |
aatcttttgttgttgctattattttaggggtttttgtgatggcatttataactgacatgtttggtatagcaattgttaatggatctttctggttagggtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |
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| T |
26856276 |
aatcttttgttgttgctattattttaggggtttttgtgatggcatttataactgacatgtttggtatagcaattgttaatgggtctttctggttgggttt |
26856375 |
T |
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| Q |
319 |
ggttactcctgatggacctcgtttaggagcaacaatggtacaaaagaccaagactattatgaatgagtttcttatgccattttcattcattatggtggga |
418 |
Q |
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|||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26856376 |
ggttacaccggatggacctcgtttaggaacaacaatggtacaaaagaccaagactattatgaatgagtttcttatgccattttcattcattatggtggga |
26856475 |
T |
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| Q |
419 |
caatattttgatttgtttgcattgggggcttctgattggaaaactttgcaacctttgcttctc |
481 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
26856476 |
caatattttgatttttttgcattgggggcttctgattggaaaagtttgcaacctttgtttctc |
26856538 |
T |
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