View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14307_low_28 (Length: 480)

Name: NF14307_low_28
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14307_low_28
NF14307_low_28
[»] chr3 (2 HSPs)
chr3 (11-463)||(45382453-45382906)
chr3 (122-168)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (117-197)||(27661703-27661783)
chr6 (117-154)||(26650237-26650274)
chr6 (117-154)||(26756205-26756242)
chr6 (113-153)||(12627824-12627864)
chr6 (117-157)||(29449688-29449728)
chr6 (42-92)||(8148268-8148318)
chr6 (45-98)||(20809178-20809231)
chr6 (117-146)||(28783014-28783043)
chr6 (99-156)||(34057962-34058019)
chr6 (43-79)||(29670971-29671007)
chr6 (120-156)||(30537508-30537544)
chr6 (45-93)||(31811989-31812037)
[»] chr7 (4 HSPs)
chr7 (117-157)||(43160491-43160531)
chr7 (108-155)||(10893872-10893919)
chr7 (117-159)||(650524-650566)
chr7 (117-153)||(18750887-18750923)
[»] chr5 (4 HSPs)
chr5 (117-156)||(28136673-28136712)
chr5 (117-154)||(645342-645379)
chr5 (108-153)||(11601688-11601733)
chr5 (45-93)||(12478334-12478382)
[»] chr8 (4 HSPs)
chr8 (50-92)||(14229600-14229642)
chr8 (117-157)||(32691750-32691790)
chr8 (108-156)||(41686804-41686852)
chr8 (108-156)||(31681833-31681881)
[»] chr2 (1 HSPs)
chr2 (63-159)||(9956949-9957045)
[»] chr4 (4 HSPs)
chr4 (117-167)||(10164460-10164510)
chr4 (117-155)||(28890768-28890806)
chr4 (113-149)||(29388374-29388410)
chr4 (117-157)||(45615427-45615467)
[»] chr1 (3 HSPs)
chr1 (108-153)||(264615-264660)
chr1 (57-97)||(27835482-27835522)
chr1 (117-153)||(43609830-43609866)


Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 463
Target Start/End: Complemental strand, 45382906 - 45382453
Alignment:
Q  11 aagcaaaggaagtgactaattggtaaataatgaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcac 110  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45382906 aagcaaaggaattgactaattggtaaataatgaactttgtagcaca-atacttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacac 45382808  T
Q  111 caacat-----------atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttcat 199  Q
    ||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  45382807 caacatgtcaccgacatatgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgaatgtcagtgtgaagtccagtgttcat 45382708  T
Q  200 gtctctggtgttcatgtcagtgcttcatagataatgaaaaatgagtggaaaaataaacttataaatcaggtatgaaataaacttacagccaaaccagatt 299  Q
    ||||||          |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382707 gtctctc---------tcagtgcttcatagataacgaaaaatgagtggaaaaataaacttataaatcaggtatgaaataaacttacagccaaaccagatt 45382617  T
Q  300 gtattctctcagcagtgtcatcagtgagcttgtctatcttttcacaatctctttcttcactagctacagcaatcttatgaaggtaaaaaggagtaagctc 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382616 gtattctctcagcagtgtcatcagtgagcttgtctatcttttcacaatctctttcttcactagctacagcaatcttatgaaggtaaaaaggagtaagctc 45382517  T
Q  400 ttttctaacttcttcaggtatctttgatagtcttcttgtttctctattcattatcacccatgtg 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382516 ttttctaacttcttcaggtatctttgatagtcttcttgtttctctattcattatcacccatgtg 45382453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 47362604 - 47362558
Alignment:
Q  122 attacattcaaatatgttattttcttaaattactactgatgttgacg 168  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  47362604 attacattcaattatgtaattttcttaaattattactgatgttgacg 47362558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 27661783 - 27661703
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttc 197  Q
    ||||||||||||| |||||| |||||||||||||||||||   |||||||||||| ||||| ||||| |||| ||||||||    
T  27661783 atgtgattacattgaaatatattattttcttaaattactatcaatgttgacgaatcagtgttagtgtcgagttcggtgttc 27661703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 26650237 - 26650274
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaattac 154  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650237 atgtgattacattcaaatatgttattttcttaaattac 26650274  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 26756205 - 26756242
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaattac 154  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756205 atgtgattacattcaaatatgttattttcttaaattac 26756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 12627824 - 12627864
Alignment:
Q  113 acatatgtgattacattcaaatatgttattttcttaaatta 153  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  12627824 acatatatgattacattgaaatatgttattttcttaaatta 12627864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 29449728 - 29449688
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaattactac 157  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  29449728 atgtgattacattcaattatgttattttctgaaattactac 29449688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 8148268 - 8148318
Alignment:
Q  42 gaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgaca 92  Q
    ||||| |||||||| |||||||| ||| ||||||||||| |||||||||||    
T  8148268 gaactatgtagcaccgacatttccgatggaaggcatgtctggtgtccgaca 8148318  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 20809178 - 20809231
Alignment:
Q  45 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtc 98  Q
    ||||||||||  |||| ||  |||||||||||||||||||||||||||| ||||    
T  20809178 ctttgtagcatcgacactttggatcgaaggcatgtccggtgtccgacatgtgtc 20809231  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 28783014 - 28783043
Alignment:
Q  117 atgtgattacattcaaatatgttattttct 146  Q
    ||||||||||||||||||||||||||||||    
T  28783014 atgtgattacattcaaatatgttattttct 28783043  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 34058019 - 34057962
Alignment:
Q  99 tgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattacta 156  Q
    |||||||| |||| ||| ||||||||||| |||| ||||| ||||||||| |||||||    
T  34058019 tgtgtctgacaccgacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 29671007 - 29670971
Alignment:
Q  43 aactttgtagcacagacatttctgatcgaaggcatgt 79  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  29671007 aactttgtaccaccgacatttctgatcgaaggcatgt 29670971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 30537544 - 30537508
Alignment:
Q  120 tgattacattcaaatatgttattttcttaaattacta 156  Q
    |||| |||||||| |||||||||||||||||||||||    
T  30537544 tgataacattcaattatgttattttcttaaattacta 30537508  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 31812037 - 31811989
Alignment:
Q  45 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 93  Q
    ||||||||||| ||||  ||||||| ||||||||||| |||||||||||    
T  31812037 ctttgtagcactgacacctctgatcaaaggcatgtccagtgtccgacat 31811989  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 43160531 - 43160491
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaattactac 157  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43160531 atgtgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 10893872 - 10893919
Alignment:
Q  108 caccaacatatgtgattacattcaaatatgttattttcttaaattact 155  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 650566 - 650524
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaattactactg 159  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  650566 atgtgattgcattcaattatgtcattttcttaaattactactg 650524  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 18750923 - 18750887
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaatta 153  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  18750923 atgtgattacattcaattatgtcattttcttaaatta 18750887  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 28136712 - 28136673
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaattacta 156  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28136712 atgtgattacattgaaatatgttattttcttaaattacta 28136673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 645379 - 645342
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaattac 154  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  645379 atgtgattacattcaattatgtcattttcttaaattac 645342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 11601733 - 11601688
Alignment:
Q  108 caccaacatatgtgattacattcaaatatgttattttcttaaatta 153  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  11601733 caccaacatatgtgattacattcaattaatttagtttcttaaatta 11601688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 12478382 - 12478334
Alignment:
Q  45 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 93  Q
    ||||||||||| |||||||||||| |||||| |||| |||||| |||||    
T  12478382 ctttgtagcaccgacatttctgatggaaggcgtgtctggtgtctgacat 12478334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 14229642 - 14229600
Alignment:
Q  50 tagcacagacatttctgatcgaaggcatgtccggtgtccgaca 92  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 32691790 - 32691750
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaattactac 157  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  32691790 atgtgattacattcaattatgtcattttcttaaattactac 32691750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 41686804 - 41686852
Alignment:
Q  108 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 156  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  41686804 caccaacacatgtgattagactcaactatgttattttcttaaattacta 41686852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 31681833 - 31681881
Alignment:
Q  108 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 156  Q
    |||| ||| |||||||| ||||||| ||||| |||||||||||||||||    
T  31681833 caccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 9956949 - 9957045
Alignment:
Q  63 tctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactg 159  Q
    ||||||| ||||||||||||||||| ||||| |||| ||||| | |||  ||| |||| ||||| ||||||||  ||||||| | |||||| |||||    
T  9956949 tctgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactg 9957045  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 10164510 - 10164460
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaattactactgatgttgac 167  Q
    |||||||||||||||| ||||  |||||||||||||||||| | |||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgac 10164460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 28890806 - 28890768
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaattact 155  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  28890806 atgtgattgcattcaattatgttattttcttaaattact 28890768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 29388374 - 29388410
Alignment:
Q  113 acatatgtgattacattcaaatatgttattttcttaa 149  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  29388374 acatatgtgattacattcaattatgtcattttcttaa 29388410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 45615427 - 45615467
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaattactac 157  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  45615427 atgtgattacgttcaattatgtcattttcttaaattactac 45615467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 264660 - 264615
Alignment:
Q  108 caccaacatatgtgattacattcaaatatgttattttcttaaatta 153  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  264660 caccaacacatgtgattacatttaagtatgttactttcttaaatta 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 27835522 - 27835482
Alignment:
Q  57 gacatttctgatcgaaggcatgtccggtgtccgacatttgt 97  Q
    |||| ||||||| ||||||||||| ||||||||||||||||    
T  27835522 gacacttctgattgaaggcatgtctggtgtccgacatttgt 27835482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 43609830 - 43609866
Alignment:
Q  117 atgtgattacattcaaatatgttattttcttaaatta 153  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  43609830 atgtgattacattcaattatgttattttctcaaatta 43609866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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