View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_29 (Length: 477)
Name: NF14307_low_29
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 36950622 - 36951075
Alignment:
| Q |
19 |
atattacgtggataattcacactataactgcaacctttaaatcagcacatattaagtattcattcacatctccattcccaagacctacaccaaaaaaccc |
118 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36950622 |
atattacgtgcataagtcacactataactgcaacctttaaatcagcacatattaagtattcattcacatctccattcccaagacctacaacaaaaaaccc |
36950721 |
T |
|
| Q |
119 |
-----tatagcctaatccttatatatattgcatcatttcatcactagttccctgcaccgatcactcccatatgctttgagtttctaaccattgaaatggg |
213 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36950722 |
ctacctatagcttaatccttatatatattgcatcgtttcatcactagttccctgcaccgatcactcccatatgctttgagtttctaaccattgaaatggg |
36950821 |
T |
|
| Q |
214 |
attcaaaaacaataacaaagtctttgttttctctatcttgatcttccttgtaatcccgactgtaatagccgcagaatgcacatgcgataaaaaagatgaa |
313 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
36950822 |
attaaaaaa--ataacaaagtctttgttttctctatcttgatcttccttgtaaccccgactctaatagccgcagaatgcacatgcgataaagaagatgaa |
36950919 |
T |
|
| Q |
314 |
gatagagacaaatccaaagcccttcgttataagatagcagctttagtatcaatactagttgcaagtggaattggtgtttgtattccacttctaggcaaag |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36950920 |
gatagagacaaatccaaagcccttcgttataagatagcagctttagtatcaatactagttgcaagtggaattggtgtttgtattccacttctaggcaaag |
36951019 |
T |
|
| Q |
414 |
tgatacccgcgttaagccctgaaaaagatatatttttcatcatcaaagcctttgct |
469 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
36951020 |
tgataccggcgttaagccctgaaaaagatatatttttcattattaaagcctttgct |
36951075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 36938404 - 36938850
Alignment:
| Q |
19 |
atattacgtggataattcacactataactgcaacctttaaatcagcacatattaagtattcattcacatctccattcccaagacctacaccaaaaaaccc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |
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| T |
36938404 |
atattacgtggataattcacactataactgtaacctttaagtca---catattaagtattcattcacatctccattaccaagacctacaacaaaa-accc |
36938499 |
T |
|
| Q |
119 |
tatagcctaatccttatatatattgcatcatttcatcactagttccctgcaccgatcactcccatatgctttgagtttctaaccattgaaatgggattca |
218 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36938500 |
tatagcctaatccttatatatattgcatcgtttcatcacttgttccctgcaccgatcactcccatatgctttgagtttctaaccattgaaatgggattaa |
36938599 |
T |
|
| Q |
219 |
aaaacaataacaaagtctttgttttctctatcttgatcttccttgtaatcccgactgtaatagccgcagaatgcacatgcgataaaaaagatgaagatag |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||| || ||| || ||||| |||||| |
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| T |
36938600 |
aaaacaataacaaagtctttgttttctctatcttgatattccttataatcccgactctaatagccgccgaatgcacgtgtgatgaagaagatttagatag |
36938699 |
T |
|
| Q |
319 |
agacaaatccaaagcccttcgttataagatagcagctttagtatcaatactagttgcaagtggaattggtgtttgtattccacttctaggcaaagtgata |
418 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36938700 |
agacaaacccaaagctcttcgttataagatagcagctttagtatcaatattagttgcaagtggaattggtgtttgtattccacttcttggcaaagtgata |
36938799 |
T |
|
| Q |
419 |
cccgcgttaagccctgaaaaagatatatttttcatcatcaaagcctttgct |
469 |
Q |
| |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
36938800 |
ccggcgttaagccccgaaaaagatatatttttcatcatcaaagcctttgct |
36938850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 187 - 469
Target Start/End: Original strand, 36955280 - 36955562
Alignment:
| Q |
187 |
ctttgagtttctaaccattgaaatgggattcaaaaacaataacaaagtctttgttttctctatcttgatcttccttgtaatcccgactgtaatagccgca |
286 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||| |||||||| ||| ||||||||||| |
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| T |
36955280 |
ctttgggtttctaacaattgaaatgggattcaaaaacaatatcaaagtcttagttttttctgtcttgatcttcctcgtaatcccaactctaatagccgca |
36955379 |
T |
|
| Q |
287 |
gaatgcacatgcgataaaaaagatgaagatagagacaaatccaaagcccttcgttataagatagcagctttagtatcaatactagttgcaagtggaattg |
386 |
Q |
| |
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||||||||||| ||| | |||||||||||||||||||| |||||||| | ||||| || |||||||||||||| ||||| |||||| ||||| ||||| |
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| T |
36955380 |
gaatgcacatgtgatgaggaagatgaagatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaattttagttgtaagtgcaattg |
36955479 |
T |
|
| Q |
387 |
gtgtttgtattccacttctaggcaaagtgatacccgcgttaagccctgaaaaagatatatttttcatcatcaaagcctttgct |
469 |
Q |
| |
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|||||| ||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
36955480 |
gtgtttttatcccacttcttggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaacctttgct |
36955562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 267 - 469
Target Start/End: Original strand, 36993041 - 36993243
Alignment:
| Q |
267 |
tcccgactgtaatagccgcagaatgcacatgcgataaaaaagatgaagatagagacaaatccaaagcccttcgttataagatagcagctttagtatcaat |
366 |
Q |
| |
|
|||| ||| ||||||| ||||| |||||||| || || |||||||||| || |||| ||| ||||| || || || || ||||| |||||||| ||||| |
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| T |
36993041 |
tcccaactctaatagctgcagagtgcacatgtgacgaagaagatgaagaaagggacagatcaaaagctctacgctacaaaatagcggctttagtgtcaat |
36993140 |
T |
|
| Q |
367 |
actagttgcaagtggaattggtgtttgtattccacttctaggcaaagtgatacccgcgttaagccctgaaaaagatatatttttcatcatcaaagccttt |
466 |
Q |
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| |||||||||||| ||||||||||||| | |||||||| || ||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
36993141 |
attagttgcaagtgcaattggtgtttgtctcccacttcttgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcattt |
36993240 |
T |
|
| Q |
467 |
gct |
469 |
Q |
| |
|
||| |
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|
| T |
36993241 |
gct |
36993243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 267 - 469
Target Start/End: Original strand, 37018481 - 37018683
Alignment:
| Q |
267 |
tcccgactgtaatagccgcagaatgcacatgcgataaaaaagatgaagatagagacaaatccaaagcccttcgttataagatagcagctttagtatcaat |
366 |
Q |
| |
|
|||| ||| ||||||| ||||| |||||||| || || |||||||||| || |||| ||| ||||| || || || || ||||| |||||||| ||||| |
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|
| T |
37018481 |
tcccaactctaatagctgcagagtgcacatgtgacgaagaagatgaagaaagggacagatcaaaagctctacgctacaaaatagcggctttagtgtcaat |
37018580 |
T |
|
| Q |
367 |
actagttgcaagtggaattggtgtttgtattccacttctaggcaaagtgatacccgcgttaagccctgaaaaagatatatttttcatcatcaaagccttt |
466 |
Q |
| |
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| |||||||||||| ||||||||||||| | |||||||| || ||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
37018581 |
attagttgcaagtgcaattggtgtttgtctcccacttcttgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcattt |
37018680 |
T |
|
| Q |
467 |
gct |
469 |
Q |
| |
|
||| |
|
|
| T |
37018681 |
gct |
37018683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 36951438 - 36951405
Alignment:
| Q |
436 |
aaaagatatatttttcatcatcaaagcctttgct |
469 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
36951438 |
aaaagatatatttttcatcattaaagcctttgct |
36951405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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