View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_30 (Length: 470)
Name: NF14307_low_30
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 40788252 - 40788093
Alignment:
| Q |
91 |
taagaagaacgagaataataaaaagaatgaaacgaaaccaactaacgtcattttgaaggtcgacatgcattgtgaaggttgttcttccaaaatcgtcaaa |
190 |
Q |
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| T |
40788252 |
taagaagaacgagaataataaaaataatgaaacgaaaccaactaacgtcattttgaaggtcgacatgcattgtgaaggttgttcttccaaaatcgtcaaa |
40788153 |
T |
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| Q |
191 |
ttcatccaaggtttcgaaggttgctactttttctctcattcctaaattatattcatcaac |
250 |
Q |
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| T |
40788152 |
ttcatccaaggtttcgaaggttgctactttttctctcattcctaaattatattcatcaac |
40788093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 40788033 - 40787885
Alignment:
| Q |
311 |
aactgaagcattgaaccttcttattgaaggcttcgaaaaacttgatattggtaatggcggaaagttaaccgtcaccggaaccgtcgatgctggaaaactc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40788033 |
aactgaagcattgaaccttcttattgaaggcttcgagaaacttgatattggtaatggcggaaagttaaccgtcaccggaaccgtcgatgctggaaaactc |
40787934 |
T |
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| Q |
411 |
agagataaccttgctattaaaacgaagaagaaagttgacttcatctctc |
459 |
Q |
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| T |
40787933 |
agagataaccttactattaaaacgaagaagaaagttgacttcatttctc |
40787885 |
T |
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