View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14307_low_31 (Length: 468)
Name: NF14307_low_31
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 2 - 453
Target Start/End: Complemental strand, 21828900 - 21828449
Alignment:
| Q |
2 |
tctgtaaaaccctaccaaaatccttcaccatcaacaatgaaacatttttggagattcacttcgaaagcatcaaaatcttccaaattcaacgaattgcata |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21828900 |
tctgtaaaaccctaccaaaatccttcaccatcaacaatgaaacatttttggagattcactttgaaagcatcaaaatcttccaaattcaaccaattgcata |
21828801 |
T |
|
| Q |
102 |
ccctttcaaatcccacattcatcaaacgattttcgaattcgaatacgccacgaaatccaaacaaggtcttagacctagtttcatttctcaaaccttcaac |
201 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21828800 |
ccctttcaaatcccacattcatcaaaagatattcgaattccaatacgccgcaaaatccaaacaaggtcttagacctagtttcatttctcaaaccttcaac |
21828701 |
T |
|
| Q |
202 |
atccattccaaatccagaatccaccgaacaaataccaaaccaagtcttagaccttgtttcactgttcaaacctccaaatcaagaggataaagtcgcaatt |
301 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21828700 |
atccattccaaatccagaatccacagaacaaataccaaaccaagccttagaccttgtttcactgttcaaacctctaaatcaagaggataaagtcgcaatt |
21828601 |
T |
|
| Q |
302 |
ttgacgaaagatttgatttgtgtagcttctgattctgttagtgttacgtctattttagatgagaattctgaatttttgattggatctcaccctgtttatt |
401 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21828600 |
ttggtcaaagatttgatttgtgtagcttctgattctgttagtgttacgtctattttggatgagaattctgaatttttgattggatctcaccctgtttata |
21828501 |
T |
|
| Q |
402 |
ttcaacttttgaatcaattggattcaaaaccttcccttttacttgaggtaat |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21828500 |
ttcaacttttgaatcaattggattcaaaaccttcccttttacttgaggtaat |
21828449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 21 - 451
Target Start/End: Complemental strand, 32373523 - 32373093
Alignment:
| Q |
21 |
atccttcaccatcaacaatgaaacatttttggagattcacttcgaaagcatcaaaatcttccaaattcaacgaattgcataccctttcaaatcccacatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32373523 |
atccttcaccatcaacaatgaaacatttttggagattcactttgaaagcatcaaaatcttccaaattcaacgaattgcataccctttcaaatcccacatt |
32373424 |
T |
|
| Q |
121 |
catcaaacgattttcgaattcgaatacgccacgaaatccaaacaaggtcttagacctagtttcatttctcaaaccttcaacatccattccaaatccagaa |
220 |
Q |
| |
|
|||||||| || |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32373423 |
catcaaacaatattcgaattcgaatacgccgcaaaatccaaacaaggtcttagacctagtttcatttctcaaaccttcaacatccattccaaatccagaa |
32373324 |
T |
|
| Q |
221 |
tccaccgaacaaataccaaaccaagtcttagaccttgtttcactgttcaaacctccaaatcaagaggataaagtcgcaattttgacgaaagatttgattt |
320 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32373323 |
tccaccgaacaaataccaaaccacgtcttagaccttgtttcattgttcaaacctccaaatcaagaggacaaagtcgcaattttgacgaaagatttgattt |
32373224 |
T |
|
| Q |
321 |
gtgtagcttctgattctgttagtgttacgtctattttagatgagaattctgaatttttgattggatctcaccctgtttattttcaacttttgaatcaatt |
420 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||||||| ||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32373223 |
gtgtagcttctgattctgttagggtttcatctattttggatcagaattctgaatatttgattggatctcaccctgtttatattcaacttttgaatcaatt |
32373124 |
T |
|
| Q |
421 |
ggattcaaaaccttcccttttacttgaggta |
451 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |
|
|
| T |
32373123 |
gaattcaaaaccttcccttttacttgaggta |
32373093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University