View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_32 (Length: 462)
Name: NF14307_low_32
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_32 |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 16963328 - 16963789
Alignment:
| Q |
1 |
cttgctgataaacaattaccagaataaactattgttcgattaaccgacaacgtcgaatcgatgcatgatggcaattttccttccagagaattgtttgaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
16963328 |
cttgctgataaacaattaccagaataaactattgttcgattcaacgacaatgtcgaatcaatgcatgatggcaattttccttctagagaattgtttgaga |
16963427 |
T |
|
| Q |
101 |
tatcaacaaatgttagagaagaaccacaagacatattcatagaaaatgaaccattaaattgatttgaagccaagtttagcttctgaatcaaaggaagaga |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16963428 |
tatcaacaaatgttagagaagaaccacaagatatattcatagaaaatgaaccattaaattgatttgaagccaagtttagcttctgaatcaaaggaagaga |
16963527 |
T |
|
| Q |
201 |
gaacagaaatgaaggaaatgcaggtcctaatttgttgttagcaagattaatctcttcaagagaggttaatcttttgagattaggaacacttccattgaaa |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16963528 |
gaacagaaatgaaggaaatccaggtcctaatttgttgttagcaagattaatctcttcaagagaggttaatcttttgagattaggaacacttccattgaaa |
16963627 |
T |
|
| Q |
301 |
aaattatcagccaaaacaagactcctgagatttttcattgaagaaactgatgatggaatttttccatacaagaaatttgatgaaatgttgaaaacttcaa |
400 |
Q |
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|||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16963628 |
aaattatcagccaaaacaagactcttaagacttttcattgaagaaactgatgatggaatttttccatacaagaaatttgatgaaatgttgaaaacttcaa |
16963727 |
T |
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| Q |
401 |
gtgacttaaacctactaatcttggaaggtagtggaccccagaaaccaagtgaaaccaatgac |
462 |
Q |
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| T |
16963728 |
gtgacttaaacctactaatcttggaaggtagtggaccccacaaaccaagtgaaaccaatgac |
16963789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 16216069 - 16216533
Alignment:
| Q |
1 |
cttgctgataaacaattaccagaataaactattgttcgattaaccgacaacgtcgaatc----gatgcatgatggcaattttccttccagagaattgttt |
96 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
16216069 |
cttgctgacaaacaattaccagaataaactattgttcgattaaccgacaacgtcgaatcaattaatgcatgatggcaattttccttctagagaattgttt |
16216168 |
T |
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| Q |
97 |
gagatatcaacaaatgttagagaagaaccacaagacatattcatagaaaatgaaccattaaattgatttgaagccaagtttagcttctgaatcaaaggaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| |
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| T |
16216169 |
gagatatcaacaaatgttagagaagaaccacaagatatattcatagaaaatgaaccattaaattgatttgaagccaggtttaggttctgtatcaaaggaa |
16216268 |
T |
|
| Q |
197 |
gagagaacagaaatgaaggaaatgcaggtcctaatttgttgttagcaagattaatctcttcaagagaggttaatcttttgagattaggaacacttccatt |
296 |
Q |
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|||||| || ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16216269 |
gagagatcaaaaatgaaggaaatccaggtcctaatttgttgttagcaaaattaacctcttcaagagaggttaatcttttgagattaggaacacttccatt |
16216368 |
T |
|
| Q |
297 |
gaaaaaattatcagccaaaacaagactcctgagatttttcattgaagaaactgatgatggaatttttccatacaagaaatttgatgaaatgttgaaaact |
396 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16216369 |
gaaaaaattatcagccaaaacaagactcttgagatttttcattgaagaaactgataatggaatttttccatacaagaaatttgatgaaatgttgaaaact |
16216468 |
T |
|
| Q |
397 |
tcaagtgacttaaacctactaatcttggaaggtagtggaccccagaaaccaagtgaaaccaatgac |
462 |
Q |
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| T |
16216469 |
tcaagtgactt-aacctactaatcttggaaggtagtggaccccacaaaccaagtaaaaccaatgac |
16216533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 462
Target Start/End: Complemental strand, 24825395 - 24825179
Alignment:
| Q |
246 |
attaatctcttcaagagaggttaatcttttgagattaggaacacttccattgaaaaaattatcagccaaaacaagactcctgagatttttcattgaagaa |
345 |
Q |
| |
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||||| |||||||||||||||||| || || |||| |||| | |||||||||||| ||||||||| | ||||| |||| | | ||| |||||||||||| |
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| T |
24825395 |
attaacctcttcaagagaggttaaactcttaagatctggaatatttccattgaaaagattatcagcaacaacaatactcttcaaattcttcattgaagaa |
24825296 |
T |
|
| Q |
346 |
actgatgatggaatttttccatacaagaaatttgatgaaatgttgaaaacttcaagtgacttaaacctactaatcttggaaggtagtggaccccagaaac |
445 |
Q |
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| ||| || ||||||| ||| | | ||||||||| |||||||| || ||| |||||| |||||| | || || | ||||| ||||||||| |||| |
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| T |
24825295 |
attgaagaaggaatttcaccagaaatgaaatttgaactaatgttgagaatttctagtgaccaaaacctgttgatttttgcaggtaatggaccccataaac |
24825196 |
T |
|
| Q |
446 |
caagtgaaaccaatgac |
462 |
Q |
| |
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| | ||||||||||||| |
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| T |
24825195 |
ctaatgaaaccaatgac |
24825179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 276 - 381
Target Start/End: Original strand, 48895984 - 48896089
Alignment:
| Q |
276 |
gagattaggaacacttccattgaaaaaattatcagccaaaacaagactcctgagatttttcattgaagaaactgatgatggaatttttccatacaagaaa |
375 |
Q |
| |
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||||||| | ||||||||||| |||| |||||||| ||||||||||||| |||| ||||| | || |||| ||||||||||||||| |||||| |||| |
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| T |
48895984 |
gagattatgtacacttccattaaaaacattatcagtcaaaacaagactcttgagctttttgaaagaggaaattgatgatggaattttatcatacatgaaa |
48896083 |
T |
|
| Q |
376 |
tttgat |
381 |
Q |
| |
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|||||| |
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| T |
48896084 |
tttgat |
48896089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 45485571 - 45485624
Alignment:
| Q |
270 |
tcttttgagattaggaacacttccattgaaaaaattatcagccaaaacaagact |
323 |
Q |
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|||||||||| ||| ||||| ||||||||||| |||||| ||||||||||||| |
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| T |
45485571 |
tcttttgagactagaaacacatccattgaaaacattatcttccaaaacaagact |
45485624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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