View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_34 (Length: 441)
Name: NF14307_low_34
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 16216513 - 16216923
Alignment:
| Q |
16 |
aaaccaagtgaaaccaatgacaaaaccttcatgtttgaaagctttgttaaaacagtgaaaaaagaatcaatagaaaatctttcagaaagagttttccttg |
115 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16216513 |
aaaccaagtaaaaccaatgacaaaaccttcatgtttgaaagttttgtcaaaacagtgaaaaaagaatcaatagaaaatctttcagaaagcgttttccttg |
16216612 |
T |
|
| Q |
116 |
agttccaagaaactgggcttattttgtttccaatgattgttaattctgttacatgattctttgagcaaacaatgttgaaagaaggtgatgaagagatgtt |
215 |
Q |
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| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
16216613 |
acttccaagaaactggccttgttttgtttccaatgattgttaattctgttacatgattctttgtgcagacaatgttgaaagaaggtgatgaagagatgtt |
16216712 |
T |
|
| Q |
216 |
acagaaacttgtgagattgttttgaagaagttgtggatattcttgaggatattcaagaagtgtttgaagttgaagaagaattctagtttcactatttgtt |
315 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16216713 |
acagaaatttgtgagattgttttgaagaagttgtggatattcttgaggatattcaagaagtgtttgaagttgaagaagaattctagtttcactatttgtt |
16216812 |
T |
|
| Q |
316 |
aattgtgcacttggaattggagtaagtagcacaagaataattgtaaagattgtaggaaacaaaaagtataaagaaaccaagaaattcttcatattttctg |
415 |
Q |
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| T |
16216813 |
aattgtgcacttggaattggagtaagtagcacaagaataattgtaaagattgtaggaaacaaaaagtataaagaaaccaagaaattcttcatattttctg |
16216912 |
T |
|
| Q |
416 |
aatgagagaga |
426 |
Q |
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| T |
16216913 |
aatgagagaga |
16216923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 16963769 - 16964179
Alignment:
| Q |
16 |
aaaccaagtgaaaccaatgacaaaaccttcatgtttgaaagctttgttaaaacagtgaaaaaagaatcaatagaaaatctttcagaaagagttttccttg |
115 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16963769 |
aaaccaagtgaaaccaatgacaaaaccttcatctttgaaagctttgtcacaacagtaaaaaaagaatcaatagaaaatctttcagaaagagttttccttg |
16963868 |
T |
|
| Q |
116 |
agttccaagaaactgggcttattttgtttccaatgattgttaattctgttacatgattctttgagcaaacaatgttgaaagaaggtgatgaagagatgtt |
215 |
Q |
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| T |
16963869 |
acttccaagaaactggtcttgttttgtttccaatgattgttaattctgttacatgattctttgtgcagacaatgttgaaagaaggtgatgaagagatgtt |
16963968 |
T |
|
| Q |
216 |
acagaaacttgtgagattgttttgaagaagttgtggatattcttgaggatattcaagaagtgtttgaagttgaagaagaattctagtttcactatttgtt |
315 |
Q |
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| T |
16963969 |
acagaaatttgtgagattgttttgaagaagttgtggatattcttgaggatattcaagaagtgtttgaagttgaagaagaattctagtttcactatttgtt |
16964068 |
T |
|
| Q |
316 |
aattgtgcacttggaattggagtaagtagcacaagaataattgtaaagattgtaggaaacaaaaagtataaagaaaccaagaaattcttcatattttctg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16964069 |
aattgtgcacttggaattggagtaagtagcacaagaataattgtaaagattgtaggaaacaaaaagtataaagaaacaaagaaattcttcatattttctg |
16964168 |
T |
|
| Q |
416 |
aatgagagaga |
426 |
Q |
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||||||||||| |
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| T |
16964169 |
aatgagagaga |
16964179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 24825191 - 24825131
Alignment:
| Q |
24 |
tgaaaccaatgacaaaaccttcatgtttgaaagctttgttaaaacagtgaaaaaagaatca |
84 |
Q |
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| T |
24825191 |
tgaaaccaatgacaaaaccttcaaatttgaaagttttgtcaaaacagtgaaaaatgaatca |
24825131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 48896157 - 48896246
Alignment:
| Q |
19 |
ccaagtgaaaccaatgacaaaaccttcatgtttgaaagctttgttaaaacagtgaaaaaagaatcaatagaaaatctttcagaaagagttt |
109 |
Q |
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|||||||| ||||||| |||| ||||||| |||||||||||||| |||||||| || | ||| |||||| | ||| | || |||||||||| |
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| T |
48896157 |
ccaagtgacaccaatggcaaa-ccttcatatttgaaagctttgtcaaaacagtaaagagagagtcaataaataatttatctgaaagagttt |
48896246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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