View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14307_low_40 (Length: 431)

Name: NF14307_low_40
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14307_low_40
NF14307_low_40
[»] chr4 (10 HSPs)
chr4 (236-415)||(43041711-43041906)
chr4 (280-415)||(8371260-8371395)
chr4 (112-170)||(43041587-43041645)
chr4 (113-170)||(8371079-8371136)
chr4 (112-160)||(23893234-23893282)
chr4 (106-149)||(23143179-23143222)
chr4 (114-156)||(28024132-28024174)
chr4 (113-149)||(34708175-34708211)
chr4 (236-278)||(8371202-8371243)
chr4 (113-150)||(22289954-22289991)
[»] chr5 (3 HSPs)
chr5 (1-114)||(8897106-8897219)
chr5 (114-160)||(9259129-9259175)
chr5 (111-149)||(34457597-34457635)
[»] chr3 (13 HSPs)
chr3 (283-411)||(25437012-25437140)
chr3 (280-385)||(50824242-50824347)
chr3 (280-385)||(50851513-50851618)
chr3 (107-170)||(25437266-25437329)
chr3 (113-162)||(37252312-37252361)
chr3 (110-150)||(20370354-20370394)
chr3 (237-278)||(30761386-30761427)
chr3 (113-160)||(30761266-30761313)
chr3 (112-155)||(53006717-53006760)
chr3 (116-169)||(50824064-50824117)
chr3 (116-169)||(50851743-50851796)
chr3 (239-267)||(5569217-5569245)
chr3 (112-148)||(27818316-27818352)
[»] chr1 (10 HSPs)
chr1 (321-411)||(4325693-4325783)
chr1 (113-170)||(4325453-4325510)
chr1 (236-278)||(4325575-4325617)
chr1 (114-149)||(41871384-41871419)
chr1 (113-151)||(26497648-26497686)
chr1 (104-150)||(34888676-34888722)
chr1 (239-267)||(26497529-26497557)
chr1 (112-148)||(30401630-30401666)
chr1 (112-148)||(30408187-30408223)
chr1 (113-149)||(43858559-43858595)
[»] scaffold1234 (2 HSPs)
scaffold1234 (105-170)||(1027-1092)
scaffold1234 (236-306)||(885-962)
[»] chr8 (8 HSPs)
chr8 (112-170)||(24471852-24471910)
chr8 (114-170)||(5769490-5769546)
chr8 (280-343)||(24471663-24471727)
chr8 (114-153)||(11071961-11072000)
chr8 (113-156)||(43721812-43721855)
chr8 (236-278)||(24471744-24471786)
chr8 (111-150)||(18997893-18997932)
chr8 (114-149)||(31379392-31379427)
[»] chr7 (7 HSPs)
chr7 (113-160)||(11674329-11674376)
chr7 (236-278)||(33868404-33868446)
chr7 (112-154)||(11001322-11001364)
chr7 (236-278)||(11002883-11002925)
chr7 (113-162)||(8026625-8026674)
chr7 (113-149)||(15494151-15494187)
chr7 (109-150)||(31097905-31097946)
[»] chr6 (10 HSPs)
chr6 (114-160)||(11179430-11179476)
chr6 (236-278)||(26533532-26533574)
chr6 (236-278)||(26533645-26533687)
chr6 (111-160)||(32447250-32447299)
chr6 (114-154)||(2737138-2737178)
chr6 (113-160)||(14895633-14895680)
chr6 (114-150)||(6300709-6300745)
chr6 (114-150)||(6307519-6307555)
chr6 (104-151)||(4096315-4096362)
chr6 (107-150)||(12597258-12597301)
[»] scaffold0323 (1 HSPs)
scaffold0323 (113-160)||(11782-11829)
[»] chr2 (3 HSPs)
chr2 (113-150)||(17839249-17839286)
chr2 (113-162)||(24125397-24125446)
chr2 (237-279)||(24125278-24125320)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 8e-65; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 236 - 415
Target Start/End: Original strand, 43041711 - 43041906
Alignment:
Q  236 tgagttcatgttggtacattgcggaaaatttctttgtaaacaat---------------cagccacaaataacacattttagacaaaacaatcaacatag 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||    
T  43041711 tgagttcatgttggtacattgcggaaaatttctttgtaaacaatatttgaagtgtagtgcagccacaaataacacattttagacaaaacaatcaacatag 43041810  T
Q  321 atttatataataataaattagcaagaatcgacaaaatgcttccaaccatacccgaaactgattcacgaacataaggttcc-ttcatttcatcattg 415  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||    
T  43041811 atttatataataataaattagcaagaatcgacaagatgcttccaaccatacccaaaactgattcacgaacataagcttcctttcatttcatcattg 43041906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 280 - 415
Target Start/End: Original strand, 8371260 - 8371395
Alignment:
Q  280 cagccacaaataacacattttagacaaaacaatcaacatagatttatataataataaattagcaagaatcgacaaaatgcttccaaccatacccgaaact 379  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |    
T  8371260 cagccacaaataacgcattttagacaaaacaatcaacatacatttatataataataaattaccaagaatcgacaaaatgcttccaaccatacccaaaagt 8371359  T
Q  380 gattcacgaacataaggttccttcatttcatcattg 415  Q
    | |||| |||||||||||||||||||||||||||||    
T  8371360 ggttcatgaacataaggttccttcatttcatcattg 8371395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 43041587 - 43041645
Alignment:
Q  112 aaactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaatacaccattc 170  Q
    ||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||    
T  43041587 aaactagacctcgcacccgtgctgccgcacgggtcatattgacggcaaatacaccattc 43041645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 8371079 - 8371136
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaatacaccattc 170  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||    
T  8371079 aactagaccttgcacccgtgctgccgcacgggtcatattgacggcaaatacatcattc 8371136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 23893282 - 23893234
Alignment:
Q  112 aaactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaa 160  Q
    |||||||||| ||||||||||| |||||||||||||||||||| |||||    
T  23893282 aaactagaccttgcacccgtgcggccgcacgggtcatattgattgcaaa 23893234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 23143179 - 23143222
Alignment:
Q  106 atattaaaactagaccatgcacccgtgctgccgcacgggtcata 149  Q
    |||||| ||||||||| |||||||||||||||||||||||||||    
T  23143179 atattacaactagaccttgcacccgtgctgccgcacgggtcata 23143222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 28024174 - 28024132
Alignment:
Q  114 actagaccatgcacccgtgctgccgcacgggtcatattgatgg 156  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  28024174 actagaccttgcacccgtgctgccgcacgggtcatgttgatgg 28024132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 34708211 - 34708175
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcata 149  Q
    ||||||||| |||||||||||||||||||||||||||    
T  34708211 aactagaccttgcacccgtgctgccgcacgggtcata 34708175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 8371202 - 8371243
Alignment:
Q  236 tgagttcatgttggtacattgcggaaaatttctttgtaaacaa 278  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  8371202 tgagttcatgttggtacattgcggaaaatct-tttgtaaacaa 8371243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 22289954 - 22289991
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcatat 150  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  22289954 aactagaccttgcacccgtgctgccgcacgagtcatat 22289991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 8897106 - 8897219
Alignment:
Q  1 gtaaaatatataatttatctgattttctttcatagttttataatatgttgttaacaatattgtgatgaaaaatagataaaaataatacataatagatatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8897106 gtaaaatatataatttatctgattttctttcatagttttataatatgctgttaacaatattgtgatgaaaaatagataaaaataatacataatagatatt 8897205  T
Q  101 taattatattaaaa 114  Q
    ||||||||||||||    
T  8897206 taattatattaaaa 8897219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 9259129 - 9259175
Alignment:
Q  114 actagaccatgcacccgtgctgccgcacgggtcatattgatggcaaa 160  Q
    |||||||| | |||||||||||||||| |||||||||||||||||||    
T  9259129 actagaccttacacccgtgctgccgcatgggtcatattgatggcaaa 9259175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 34457635 - 34457597
Alignment:
Q  111 aaaactagaccatgcacccgtgctgccgcacgggtcata 149  Q
    |||||||| || |||||||||||||||||||||||||||    
T  34457635 aaaactagtccttgcacccgtgctgccgcacgggtcata 34457597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 283 - 411
Target Start/End: Complemental strand, 25437140 - 25437012
Alignment:
Q  283 ccacaaataacacattttagacaaaacaatcaacatagatttatataataataaattagcaagaatcgacaaaatgcttccaaccatacccgaaactgat 382  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |    
T  25437140 ccacaaataacgcattttagacaaaacaatcaacatacatttatataataataaattaccaagaatcgacaaaatgcttccaaccatacctgaaactggt 25437041  T
Q  383 tcacgaacataaggttccttcatttcatc 411  Q
    ||| |||||||||||||||||||||||||    
T  25437040 tcatgaacataaggttccttcatttcatc 25437012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 280 - 385
Target Start/End: Original strand, 50824242 - 50824347
Alignment:
Q  280 cagccacaaataacacattttagacaaaacaatcaacatagatttatataataataaattagcaagaatcgacaaaatgcttccaaccatacccgaaact 379  Q
    |||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||    
T  50824242 cagccacaaataacgcatcttagagaaaacaatcaacatacatttatataataataaattaccatgaatcgacaaaatgcttcgaaccatacccgaaact 50824341  T
Q  380 gattca 385  Q
    | ||||    
T  50824342 ggttca 50824347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 280 - 385
Target Start/End: Complemental strand, 50851618 - 50851513
Alignment:
Q  280 cagccacaaataacacattttagacaaaacaatcaacatagatttatataataataaattagcaagaatcgacaaaatgcttccaaccatacccgaaact 379  Q
    |||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||    
T  50851618 cagccacaaataacgcatcttagagaaaacaatcaacatacatttatataataataaattaccatgaatcgacaaaatgcttcgaaccatacccgaaact 50851519  T
Q  380 gattca 385  Q
    | ||||    
T  50851518 ggttca 50851513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 25437329 - 25437266
Alignment:
Q  107 tattaaaactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaatacaccattc 170  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25437329 tattaatactagaccttgcacccgtgctgccgcacgggtcatattgacggcaaatacaccattc 25437266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 37252312 - 37252361
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaata 162  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  37252312 aactagaccttgcacccgtgctgctgcacgggtcatattgacggcaaata 37252361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 20370354 - 20370394
Alignment:
Q  110 taaaactagaccatgcacccgtgctgccgcacgggtcatat 150  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  20370354 taaaactagaccatccacccgtgctgccgcacgggtcatat 20370394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 30761386 - 30761427
Alignment:
Q  237 gagttcatgttggtacattgcggaaaatttctttgtaaacaa 278  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  30761386 gagttcgtgttggtacattgcgaaaaatttctttgtaaacaa 30761427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 30761266 - 30761313
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaa 160  Q
    ||||||||||| ||||||||||  ||||||||||||||||| ||||||    
T  30761266 aactagaccatccacccgtgctatcgcacgggtcatattgacggcaaa 30761313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 53006760 - 53006717
Alignment:
Q  112 aaactagaccatgcacccgtgctgccgcacgggtcatattgatg 155  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||    
T  53006760 aaactggaccttgcacccgtgctgccgcacggatcatattgatg 53006717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 50824064 - 50824117
Alignment:
Q  116 tagaccatgcacccgtgctgccgcacgggtcatattgatggcaaatacaccatt 169  Q
    |||||| |||| |||||||||||||||| ||||||||| | |||||||| ||||    
T  50824064 tagaccttgcatccgtgctgccgcacggttcatattgacgacaaatacatcatt 50824117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 50851796 - 50851743
Alignment:
Q  116 tagaccatgcacccgtgctgccgcacgggtcatattgatggcaaatacaccatt 169  Q
    |||||| |||| |||||||||||||||| ||||||||| | |||||||| ||||    
T  50851796 tagaccttgcatccgtgctgccgcacggttcatattgacgacaaatacatcatt 50851743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 5569217 - 5569245
Alignment:
Q  239 gttcatgttggtacattgcggaaaatttc 267  Q
    |||||||||||||||||||||||||||||    
T  5569217 gttcatgttggtacattgcggaaaatttc 5569245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 27818316 - 27818352
Alignment:
Q  112 aaactagaccatgcacccgtgctgccgcacgggtcat 148  Q
    ||||||||||||  |||||||||||||||||||||||    
T  27818316 aaactagaccatcgacccgtgctgccgcacgggtcat 27818352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 321 - 411
Target Start/End: Original strand, 4325693 - 4325783
Alignment:
Q  321 atttatataataataaattagcaagaatcgacaaaatgcttccaaccatacccgaaactgattcacgaacataaggttccttcatttcatc 411  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4325693 atttatataataataatttagcaagaatcgacaaaatgcttccaaccatacccaaaactgattcacgaacataaggttccttcatttcatc 4325783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 4325453 - 4325510
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaatacaccattc 170  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||    
T  4325453 aactagaccttgcacccgtgctgccgcacgggtcatattgatggaaaatacatcattc 4325510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 4325575 - 4325617
Alignment:
Q  236 tgagttcatgttggtacattgcggaaaatttctttgtaaacaa 278  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  4325575 tgagttcatgttggtacattgtggaaaatttctttgtaaacaa 4325617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 149
Target Start/End: Complemental strand, 41871419 - 41871384
Alignment:
Q  114 actagaccatgcacccgtgctgccgcacgggtcata 149  Q
    |||||||| |||||||||||||||||||||||||||    
T  41871419 actagaccttgcacccgtgctgccgcacgggtcata 41871384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 26497686 - 26497648
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcatatt 151  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  26497686 aactagactttgcacccgtgctgccgcacgggtcatatt 26497648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 34888676 - 34888722
Alignment:
Q  104 ttatattaaaactagaccatgcacccgtgctgccgcacgggtcatat 150  Q
    ||||||| |||||||||  | ||||||||||||||||||||||||||    
T  34888676 ttatatttaaactagactttccacccgtgctgccgcacgggtcatat 34888722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 26497557 - 26497529
Alignment:
Q  239 gttcatgttggtacattgcggaaaatttc 267  Q
    |||||||||||||||||||||||||||||    
T  26497557 gttcatgttggtacattgcggaaaatttc 26497529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 30401630 - 30401666
Alignment:
Q  112 aaactagaccatgcacccgtgctgccgcacgggtcat 148  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  30401630 aaactagaccatccacccgtgctgtcgcacgggtcat 30401666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 30408187 - 30408223
Alignment:
Q  112 aaactagaccatgcacccgtgctgccgcacgggtcat 148  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  30408187 aaactagaccatccacccgtgctgtcgcacgggtcat 30408223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 43858595 - 43858559
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcata 149  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  43858595 aactagaccttgcacccgtgctgtcgcacgggtcata 43858559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1234 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold1234
Description:

Target: scaffold1234; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 1092 - 1027
Alignment:
Q  105 tatattaaaactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaatacaccattc 170  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| |||||    
T  1092 tatattaaaactagaccttgcacccgtgctgccgcacgggtcatattgacgacaaatacatcattc 1027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1234; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 962 - 885
Alignment:
Q  236 tgagttcatgttggtacattgcggaaaatttctttgtaaacaa-------tcagccacaaataacacattttagacaa 306  Q
    |||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||| |||||||||||    
T  962 tgagttcatgttagtacattgcggaaaatttctttgtaaacaagtgtagtgcagccacaaataacatattttagacaa 885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 24471910 - 24471852
Alignment:
Q  112 aaactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaatacaccattc 170  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||    
T  24471910 aaactagaccttgcacccgtgctgccgcacgggtcatattgacggcaaatacatcattc 24471852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 5769490 - 5769546
Alignment:
Q  114 actagaccatgcacccgtgctgccgcacgggtcatattgatggcaaatacaccattc 170  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||    
T  5769490 actagaccttgcacccgtgctgccgcacgggtcatattgacggcaaatacatcattc 5769546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 24471727 - 24471663
Alignment:
Q  280 cagccacaaataacacattttagacaaaacaatcaacatagatttatat-aataataaattagca 343  Q
    |||||| || |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  24471727 cagccataattaacacatttaagacaaaacaatcaacatacatttatataaataataaattagca 24471663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 153
Target Start/End: Original strand, 11071961 - 11072000
Alignment:
Q  114 actagaccatgcacccgtgctgccgcacgggtcatattga 153  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  11071961 actagaccttgcacccgtgctgccgcacgggtcatattga 11072000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 43721855 - 43721812
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcatattgatgg 156  Q
    ||||||||| |||| |||||||||||||||||||||||||||||    
T  43721855 aactagaccttgcatccgtgctgccgcacgggtcatattgatgg 43721812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 24471786 - 24471744
Alignment:
Q  236 tgagttcatgttggtacattgcggaaaatttctttgtaaacaa 278  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  24471786 tgagttcatgttggtacattgcataaaatttctttgtaaacaa 24471744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 18997932 - 18997893
Alignment:
Q  111 aaaactagaccatgcacccgtgctgccgcacgggtcatat 150  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  18997932 aaaactagactatccacccgtgctgccgcacgggtcatat 18997893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 149
Target Start/End: Complemental strand, 31379427 - 31379392
Alignment:
Q  114 actagaccatgcacccgtgctgccgcacgggtcata 149  Q
    |||||||| |||||||||||||||||||||||||||    
T  31379427 actagaccttgcacccgtgctgccgcacgggtcata 31379392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 11674376 - 11674329
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaa 160  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  11674376 aactagaccttgcacctgtgctgccgcacgggtcatattgatggcaaa 11674329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 33868446 - 33868404
Alignment:
Q  236 tgagttcatgttggtacattgcggaaaatttctttgtaaacaa 278  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  33868446 tgagttcatgttagtacattgcggaaaatttctttgtaaacaa 33868404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 11001322 - 11001364
Alignment:
Q  112 aaactagaccatgcacccgtgctgccgcacgggtcatattgat 154  Q
    |||||||||| | ||||||||||||||||||||||||||||||    
T  11001322 aaactagaccttccacccgtgctgccgcacgggtcatattgat 11001364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 11002883 - 11002925
Alignment:
Q  236 tgagttcatgttggtacattgcggaaaatttctttgtaaacaa 278  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  11002883 tgagttcatgttggtacattgcgaaaaatttccttgtaaacaa 11002925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 8026625 - 8026674
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaata 162  Q
    ||||||||||| ||||||||| || |||||||||||||||| ||||||||    
T  8026625 aactagaccatccacccgtgcggcagcacgggtcatattgacggcaaata 8026674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 15494151 - 15494187
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcata 149  Q
    ||||||||| |||||||||||||||||||||||||||    
T  15494151 aactagaccttgcacccgtgctgccgcacgggtcata 15494187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 31097946 - 31097905
Alignment:
Q  109 ttaaaactagaccatgcacccgtgctgccgcacgggtcatat 150  Q
    ||||||||||| | | ||||||||||||||||||||||||||    
T  31097946 ttaaaactagatcgtccacccgtgctgccgcacgggtcatat 31097905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 11179476 - 11179430
Alignment:
Q  114 actagaccatgcacccgtgctgccgcacgggtcatattgatggcaaa 160  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||    
T  11179476 actagaccttgcacccgtgctgctgcacgggtcatattgatggcaaa 11179430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 26533574 - 26533532
Alignment:
Q  236 tgagttcatgttggtacattgcggaaaatttctttgtaaacaa 278  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  26533574 tgagttcatgctggtacattgcggaaaatttctttgtaaacaa 26533532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 26533687 - 26533645
Alignment:
Q  236 tgagttcatgttggtacattgcggaaaatttctttgtaaacaa 278  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  26533687 tgagttcatgctggtacattgcggaaaatttctttgtaaacaa 26533645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 32447299 - 32447250
Alignment:
Q  111 aaaactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaa 160  Q
    ||||||||||| |||||||||| || ||||||||||||||||||||||||    
T  32447299 aaaactagaccttgcacccgtgttgtcgcacgggtcatattgatggcaaa 32447250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 2737178 - 2737138
Alignment:
Q  114 actagaccatgcacccgtgctgccgcacgggtcatattgat 154  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  2737178 actagaccatccacccgtgctgccgcacgggtcatattgat 2737138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 14895680 - 14895633
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaa 160  Q
    ||||||||| |||| ||||||||||||||||||||||||||| |||||    
T  14895680 aactagaccttgcatccgtgctgccgcacgggtcatattgattgcaaa 14895633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 6300709 - 6300745
Alignment:
Q  114 actagaccatgcacccgtgctgccgcacgggtcatat 150  Q
    ||||||| |||||||||||||||||||||||||||||    
T  6300709 actagactatgcacccgtgctgccgcacgggtcatat 6300745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 6307519 - 6307555
Alignment:
Q  114 actagaccatgcacccgtgctgccgcacgggtcatat 150  Q
    ||||||| |||||||||||||||||||||||||||||    
T  6307519 actagactatgcacccgtgctgccgcacgggtcatat 6307555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 4096362 - 4096315
Alignment:
Q  104 ttatattaaaactagaccatgcacccgtgctgccgcacgggtcatatt 151  Q
    |||||| ||||||||||||| ||||||||||| ||| |||||||||||    
T  4096362 ttatatgaaaactagaccatccacccgtgctgtcgcccgggtcatatt 4096315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 12597258 - 12597301
Alignment:
Q  107 tattaaaactagaccatgcacccgtgctgccgcacgggtcatat 150  Q
    ||||||||||||||  | ||||||||||||||||||||||||||    
T  12597258 tattaaaactagactttccacccgtgctgccgcacgggtcatat 12597301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 11829 - 11782
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaa 160  Q
    ||||||||||| |||||||||||||||||| |||||||||| ||||||    
T  11829 aactagaccatccacccgtgctgccgcacgtgtcatattgacggcaaa 11782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 17839286 - 17839249
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcatat 150  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  17839286 aactagaccatccacccgtgctgccgcacgggtcatat 17839249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 24125446 - 24125397
Alignment:
Q  113 aactagaccatgcacccgtgctgccgcacgggtcatattgatggcaaata 162  Q
    ||||||||| |||||||||||||||||||| ||||||| || ||||||||    
T  24125446 aactagaccttgcacccgtgctgccgcacgtgtcatatcgacggcaaata 24125397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 24125320 - 24125278
Alignment:
Q  237 gagttcatgttggtacattgcggaaaatttctttgtaaacaat 279  Q
    |||||||||||||||||||||| |||||||| ||| |||||||    
T  24125320 gagttcatgttggtacattgcgaaaaatttccttgcaaacaat 24125278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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