View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_42 (Length: 422)
Name: NF14307_low_42
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 44554780 - 44554535
Alignment:
| Q |
10 |
aagaatatatccttttctttttgtgtaaatcgattaggttaggctaagaaaaaaggttattttttaatttattagataaattaagtaaaagttatgaaaa |
109 |
Q |
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| T |
44554780 |
aagattatatccttttctttttgtgtaaatcgattaggttaggctaagaaaaaaggttattttttaatttattagataaattaagtaaaagttatgaaaa |
44554681 |
T |
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| Q |
110 |
tgatttagaagtttatataaatatgatcttaaataagagttatctac----gtcatattgtaaatcaatcaaagataaattactagttcattaactattt |
205 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
44554680 |
tgatttagaagtttatataaatatgatgttaaataagagttatctatatatgtcatattgtaaatcaatcaaagataaattactagtttattaattattt |
44554581 |
T |
|
| Q |
206 |
atttgattttactttgtgtcttaactagttttcattacgaatgtgt |
251 |
Q |
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| T |
44554580 |
atttgatttcactttgtctcttaactagttttgattacgaatgtgt |
44554535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 308 - 405
Target Start/End: Complemental strand, 44554541 - 44554444
Alignment:
| Q |
308 |
aatgtcttaagcgaccatacattacagatgatttaccaaagagttcattaactaatagaatattattgtcattaatcaatagtatatttgtaattatt |
405 |
Q |
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| T |
44554541 |
aatgtgttaagcgaccatacattacagatgatttaccaaagagttcattaactaatagaatattattgtcattaatcaatagtatatttgtaattatt |
44554444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 44553124 - 44553168
Alignment:
| Q |
362 |
atagaatattattgtcattaatcaatagtatatttgtaattattt |
406 |
Q |
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| T |
44553124 |
atagaatattattgtcattaatcaatagtatatttgtaattattt |
44553168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 29193865 - 29193821
Alignment:
| Q |
362 |
atagaatattattgtcattaatcaatagtatatttgtaattattt |
406 |
Q |
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| T |
29193865 |
atagaatattattgtcattagtcaataatatatttgtaattattt |
29193821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 23584309 - 23584355
Alignment:
| Q |
360 |
taatagaatattattgtcattaatcaatagtatatttgtaattattt |
406 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23584309 |
taatagaatattcttgtcattaatcaatagtatatttgtaattattt |
23584355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 667347 - 667303
Alignment:
| Q |
362 |
atagaatattattgtcattaatcaatagtatatttgtaattattt |
406 |
Q |
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| T |
667347 |
atagaatattattgtcattagtcaataatatatttgtaattattt |
667303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 403
Target Start/End: Original strand, 667156 - 667197
Alignment:
| Q |
362 |
atagaatattattgtcattaatcaatagtatatttgtaatta |
403 |
Q |
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| T |
667156 |
atagaatattattgtcattagtcaataatatatttgtaatta |
667197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 667233 - 667196
Alignment:
| Q |
366 |
aatattattgtcattaatcaatagtatatttgtaatta |
403 |
Q |
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|||||||||||||||| |||||| |||||||||||||| |
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| T |
667233 |
aatattattgtcattagtcaataatatatttgtaatta |
667196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 8976981 - 8976937
Alignment:
| Q |
362 |
atagaatattattgtcattaatcaatagtatatttgtaattattt |
406 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
8976981 |
atagaatattcttgtcattaaacaatagtatatttgtaattattt |
8976937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 22207590 - 22207558
Alignment:
| Q |
374 |
tgtcattaatcaatagtatatttgtaattattt |
406 |
Q |
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| T |
22207590 |
tgtcattaatcaatagtatatttgtaattattt |
22207558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 22209562 - 22209531
Alignment:
| Q |
375 |
gtcattaatcaatagtatatttgtaattattt |
406 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
22209562 |
gtcattaatcaatagtatatttgtaattattt |
22209531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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