View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_46 (Length: 405)
Name: NF14307_low_46
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 4687251 - 4686849
Alignment:
| Q |
1 |
tgttttgagtgatctatctaatagaacttcacaaacatagttgctaaggtggtagtgagagttactgttgagctgacggttagtagttagtttctgttat |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4687251 |
tgttttgagtgatctatctaatacaacttcacaaacatagttgctaaggtggtagtgagagttactgttgagctgacagttagtagttagtttctgttat |
4687152 |
T |
|
| Q |
101 |
caatctgttgtaacttcatttcctattttcagctttctacttgatcatatagaatagtagaaaccgattctttgttgaataagactaagagaattcattt |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4687151 |
caatctgttgtaacttcatttcccattttcagctttctacttgttcatatagaatagtagaaaccgattctttgttgaataagactaagagaattcattt |
4687052 |
T |
|
| Q |
201 |
ggtaatattggttcattggttctcttcttcctccttgatttctctctgatttcgatctggttatactatctaagattaacaattcactctaaagcataaa |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4687051 |
ggtaatattggttcattggttctcttcttcttccttgatttctctctgatttcgatctggttatactatctaagattaacgattcactctaaagcataaa |
4686952 |
T |
|
| Q |
301 |
ataagtaattttaactcttgaaaatcagtggttgatgttacatgtccccacaccacaacctctctagaactttgcaaacacgtttctattatcgttcttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || ||| |
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| T |
4686951 |
ataagtaattttaactcttgaaaatcagtggttgatgttacatgtccccacaccacaacctctctagaactttgcaaacatgtttctaatatcttttttg |
4686852 |
T |
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| Q |
401 |
tta |
403 |
Q |
| |
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||| |
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| T |
4686851 |
tta |
4686849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 79 - 272
Target Start/End: Complemental strand, 4685073 - 4684886
Alignment:
| Q |
79 |
gttagtagttagtttctgttatcaatctgttgtaacttcatttcctattttcagctttctacttgatcatatagaatagtagaaaccgattctttgttga |
178 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
4685073 |
gttagtagttagtttctgttatcaatctgttgcaacttcctttcctgttttcagctttctacttgttcatatagaatagtagaaactgattctttgttga |
4684974 |
T |
|
| Q |
179 |
ataagactaagagaattcatttggtaatattggttcattggttctcttcttcctccttgatttctctctgatttcgatctggttatactatcta |
272 |
Q |
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|| |||||||||| |||| |||||||||||||||||||||||| | | |||| || ||||||||||| | |||||||||| ||||| |
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| T |
4684973 |
at------aagagaattcttttgataatattggttcattggttctctttattatatttgagttatctctgatttcaagctggttataccatcta |
4684886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4685142 - 4685109
Alignment:
| Q |
1 |
tgttttgagtgatctatctaatagaacttcacaa |
34 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
4685142 |
tgttttgagtgatctatctaatacaacttcacaa |
4685109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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