View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_49 (Length: 397)
Name: NF14307_low_49
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 30784244 - 30784624
Alignment:
| Q |
1 |
caataatagcatagaataatttagtgatactactacataccggcgcctgtaatatttgatcccttaaaagatgtatttcccgttacaagtgcaccttcca |
100 |
Q |
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| T |
30784244 |
caataatagcatagaataatttattgataccactacataccggcgcctgtaatatttgatcccttaaaagatgtatttcccgttacaagtgcaccttcca |
30784343 |
T |
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| Q |
101 |
aattagcattgctcaaatttacctgcagaaagcggtaacgcaacacaccaaattgagaaatggcagaagaaaacatttgttaattacagtgatttgaggc |
200 |
Q |
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| T |
30784344 |
aattagcattgctcaaatttacctgcagaaagcggtaatgcaacacaccaaattgagaaatggcagaagaaaacatttgttaattacagtgatttgaggc |
30784443 |
T |
|
| Q |
201 |
acgttttcagcttcaactaaattaatacttgtaggactaaaaagtatagtatatagaacagatttgtagcgttcactataagattgttttgacagggcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30784444 |
acgttttcagcttcaactaaattaatacttgtaggactaaaaagtatagtacatagaacagatttgtagagttcactataagattgttttgacagggcaa |
30784543 |
T |
|
| Q |
301 |
acttatgacatttcattagctctcttataagatatatccctcgaatattctaatttgccattttaatttaatttcttacca |
381 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30784544 |
acttatgacatttcattagctctcttgtaagatatatcccttgaatattctaatttgccattttaatttaatttcttacca |
30784624 |
T |
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