View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_50 (Length: 395)
Name: NF14307_low_50
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 24650466 - 24650275
Alignment:
| Q |
5 |
taacaactcatgaccaggattcaaaggtgaacttcataatttttagtccacattttgtagtatgatgtattatcaacaacaaagaatatcgtgcataaat |
104 |
Q |
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| T |
24650466 |
taacaactcatgaccaggattcaaaggtgaacttcataatttttagtccacattttgtagtatgatgtattatcaacaacaaagaataccgtgcataaat |
24650367 |
T |
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| Q |
105 |
ttttatgcaacatcttacaccctccagtcttttttataaaaagagaaacaaaaaattatcaaaaccaagataatattcattagttgttgcaa |
196 |
Q |
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| T |
24650366 |
ttttatgcaacatcttacaccctccagtcttttttgtaaaaagagaaacaaaaaattatcaaaaccaagacaatattcattagttgttgcaa |
24650275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 24650130 - 24650091
Alignment:
| Q |
341 |
ataaataggacattaaaattaagattttatatgtatgttt |
380 |
Q |
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| T |
24650130 |
ataaataggacattaaaattaagattttatatttatgttt |
24650091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 9425705 - 9425647
Alignment:
| Q |
135 |
tttttataaaaagagaaacaaaaaattatcaaaaccaagataatattcattagttgttgcaa |
196 |
Q |
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||||||||| ||||||||| |||||| ||||||||||||| || |||||||||||||||| |
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| T |
9425705 |
tttttataagaagagaaaccaaaaatcatcaaaaccaagaaaa---tcattagttgttgcaa |
9425647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 15766427 - 15766380
Alignment:
| Q |
131 |
gtcttttttataaaaagagaaacaaaaaattatcaaaaccaagataat |
178 |
Q |
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| T |
15766427 |
gtcttttttataagaagagaaagcaaaaattatcaaatccaagataat |
15766380 |
T |
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