View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14307_low_51 (Length: 385)
Name: NF14307_low_51
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 105 - 350
Target Start/End: Original strand, 26560702 - 26560947
Alignment:
| Q |
105 |
accattaaaggtatgaagtgcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatctttt |
204 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26560702 |
accatcaaaggtatgaagggcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatcttgt |
26560801 |
T |
|
| Q |
205 |
tgttcttgttaatgactccggcgccgttcactataatatctgaaggacctccatttttctccataacaatgagcgccatctcttcgactctgttattgca |
304 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
26560802 |
tgttcttgttaacgactccggcgccgttcactataatatctgaaggacctccatttttctccataaaaatgcacgccatctcttcaactctgttattgca |
26560901 |
T |
|
| Q |
305 |
cctaacatcaatattgaggaatatatgatggttgttgttaggaagt |
350 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| || |||||| |
|
|
| T |
26560902 |
cctaacatcaatattgaggaatagatgatggttgttattgggaagt |
26560947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 26563025 - 26562728
Alignment:
| Q |
1 |
actcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacaagtgcagcacctgatcttccccaacc---tgaaga |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || || | | |
|
|
| T |
26563025 |
actcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacgagtgcagcacctgatcttatccctccctcttcatt |
26562926 |
T |
|
| Q |
98 |
catgttc------accattaaaggtatgaagtgcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacc |
191 |
Q |
| |
|
| ||||| ||||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26562925 |
cttgttctttttaaccatcaaagaaatgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatcaaactcttcagacaaaacc |
26562826 |
T |
|
| Q |
192 |
tcccacatctttttgttcttgttaatgactccggcgccgttcactataatatctgaaggacctccatttttctccataacaatgagcgccatctcttc |
289 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26562825 |
tcccacatcttgttgttcttgttaatgactccagcgtcgttcactataatatttggaggacctccatttttctccataacaatgcacgccatctcttc |
26562728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 107 - 315
Target Start/End: Original strand, 24890163 - 24890371
Alignment:
| Q |
107 |
cattaaaggtatgaagtgcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatctttttg |
206 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| || |
|
|
| T |
24890163 |
cattagaggaatgaagtgcctcaacacattggcagtacctttcaagttggtatccatcaccgaatcaaactcttcagagggaacctcccacatcttactg |
24890262 |
T |
|
| Q |
207 |
ttcttgttaatgactccggcgccgttcactataatatctgaaggacctccatttttctccataacaatgagcgccatctcttcgactctgttattgcacc |
306 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| ||||||||| |||||||||||||||||| | ||||||||||| || ||| |||||||| |
|
|
| T |
24890263 |
ttcttgttaatgacgccagcgccgttcactataatatctggaggacctccttttttctccataacaatgtgtgccatctcttcaacgttgtaattgcacc |
24890362 |
T |
|
| Q |
307 |
taacatcaa |
315 |
Q |
| |
|
||||||||| |
|
|
| T |
24890363 |
taacatcaa |
24890371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24890021 - 24890131
Alignment:
| Q |
1 |
actcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacaagtgcagcacctgatcttccccaacctgaagacat |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
24890021 |
actcttcagcaacagacttagtgagtccttcaattgcccatttggatgcacaataaggtgctacaagtgctgcacctgatcttccccaaccagaagacat |
24890120 |
T |
|
| Q |
101 |
gttcaccatta |
111 |
Q |
| |
|
|||||| |||| |
|
|
| T |
24890121 |
gttcactatta |
24890131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 26560562 - 26560672
Alignment:
| Q |
1 |
actcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacaagtgcagcacctgatcttccccaacctgaagacat |
100 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26560562 |
actcttcaacaacagacttggtaagtccttcaattgcccatttggatacacagtaaggtgctacaagtgcagcaactgatcttccccaacctgaagacat |
26560661 |
T |
|
| Q |
101 |
gttcaccatta |
111 |
Q |
| |
|
|||||| |||| |
|
|
| T |
26560662 |
gttcactatta |
26560672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 56436896 - 56436799
Alignment:
| Q |
117 |
atgaagtgcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatctttttgttcttgtt |
214 |
Q |
| |
|
||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
56436896 |
atgaaatgtctcaacacattggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
56436799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 56437042 - 56436944
Alignment:
| Q |
1 |
actcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacaagtgcagcacctgatcttccccaacctgaagaca |
99 |
Q |
| |
|
|||||| ||| |||||||| |||||||||||||| |||||||||||||| ||||||| || |||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
56437042 |
actctttagctacagactttgtgagtccttcaatagcccatttggatgcacagtaaggagcaacaagtgctgcacccgatcttccccaaccagaagaca |
56436944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University