View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14307_low_52 (Length: 380)

Name: NF14307_low_52
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14307_low_52
NF14307_low_52
[»] chr6 (15 HSPs)
chr6 (18-178)||(27159091-27159251)
chr6 (222-370)||(27158866-27159014)
chr6 (80-152)||(9605414-9605486)
chr6 (73-148)||(3633661-3633736)
chr6 (54-147)||(9210679-9210772)
chr6 (54-152)||(9210623-9210720)
chr6 (110-147)||(16433952-16433989)
chr6 (90-147)||(20703435-20703492)
chr6 (54-145)||(32650091-32650182)
chr6 (54-152)||(7055554-7055651)
chr6 (73-150)||(9605381-9605458)
chr6 (150-179)||(27159062-27159091)
chr6 (73-129)||(674120-674176)
chr6 (73-121)||(2271203-2271251)
chr6 (93-136)||(29278517-29278561)
[»] chr5 (12 HSPs)
chr5 (52-142)||(40773029-40773118)
chr5 (65-152)||(39231840-39231927)
chr5 (54-145)||(5354803-5354894)
chr5 (54-128)||(12645419-12645493)
chr5 (73-133)||(5354763-5354823)
chr5 (73-147)||(17768062-17768133)
chr5 (73-128)||(19087848-19087903)
chr5 (54-152)||(8850259-8850356)
chr5 (65-127)||(28351016-28351078)
chr5 (54-150)||(40772964-40773063)
chr5 (88-128)||(8850334-8850374)
chr5 (73-145)||(13391585-13391657)
[»] chr8 (8 HSPs)
chr8 (80-152)||(4578209-4578281)
chr8 (54-150)||(4578237-4578334)
chr8 (73-128)||(34286273-34286328)
chr8 (53-147)||(30857281-30857375)
chr8 (90-128)||(12381111-12381149)
chr8 (111-147)||(11334296-11334332)
chr8 (73-133)||(17871777-17871837)
chr8 (73-149)||(30857243-30857319)
[»] chr1 (25 HSPs)
chr1 (73-152)||(21945105-21945184)
chr1 (73-152)||(4604852-4604931)
chr1 (53-152)||(42074180-42074279)
chr1 (80-152)||(50692107-50692179)
chr1 (73-147)||(4604890-4604964)
chr1 (73-150)||(21945072-21945149)
chr1 (88-147)||(12321479-12321538)
chr1 (54-128)||(457643-457717)
chr1 (54-128)||(30412592-30412666)
chr1 (54-152)||(47911897-47911994)
chr1 (73-145)||(25554597-25554669)
chr1 (52-128)||(47911843-47911919)
chr1 (80-152)||(50692133-50692205)
chr1 (54-152)||(457568-457665)
chr1 (52-130)||(14231115-14231193)
chr1 (54-146)||(38173470-38173563)
chr1 (73-124)||(4540695-4540746)
chr1 (110-145)||(27559979-27560014)
chr1 (73-152)||(30412644-30412722)
chr1 (54-129)||(31032512-31032587)
chr1 (80-147)||(46673860-46673927)
chr1 (73-143)||(50267056-50267126)
chr1 (110-147)||(1599083-1599120)
chr1 (54-103)||(24419629-24419678)
chr1 (88-145)||(48636747-48636804)
[»] chr3 (9 HSPs)
chr3 (73-143)||(9502886-9502956)
chr3 (66-147)||(38207477-38207557)
chr3 (73-145)||(27786510-27786582)
chr3 (73-152)||(27786470-27786549)
chr3 (54-128)||(26331288-26331361)
chr3 (54-124)||(55121249-55121319)
chr3 (65-142)||(36443929-36444006)
chr3 (88-148)||(27697317-27697377)
chr3 (73-129)||(55121188-55121244)
[»] chr4 (15 HSPs)
chr4 (52-125)||(23614449-23614522)
chr4 (52-152)||(32125385-32125485)
chr4 (59-152)||(47493201-47493294)
chr4 (73-148)||(29943657-29943731)
chr4 (90-135)||(51333504-51333549)
chr4 (54-118)||(6371996-6372060)
chr4 (81-152)||(52280914-52280985)
chr4 (54-148)||(32125333-32125427)
chr4 (67-103)||(23614410-23614446)
chr4 (63-146)||(29943695-29943778)
chr4 (80-152)||(2091370-2091441)
chr4 (54-146)||(24654147-24654239)
chr4 (93-133)||(26165968-26166008)
chr4 (73-145)||(46518474-46518546)
chr4 (76-124)||(51313541-51313589)
[»] chr2 (8 HSPs)
chr2 (73-152)||(32082136-32082215)
chr2 (111-145)||(40532837-40532871)
chr2 (73-145)||(23143540-23143612)
chr2 (73-145)||(23555330-23555402)
chr2 (54-106)||(30429064-30429116)
chr2 (52-152)||(33853877-33853976)
chr2 (73-147)||(19268074-19268148)
chr2 (116-152)||(11385809-11385845)
[»] chr7 (8 HSPs)
chr7 (68-150)||(24407176-24407258)
chr7 (54-128)||(29229668-29229742)
chr7 (54-128)||(35274483-35274557)
chr7 (73-146)||(28038553-28038625)
chr7 (54-152)||(35274408-35274505)
chr7 (76-145)||(29168380-29168449)
chr7 (53-118)||(29229753-29229817)
chr7 (61-129)||(3485892-3485960)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 27159251 - 27159091
Alignment:
Q  18 tttctcaatctcaaaatacaaggaatacaatcgttgtactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgta 117  Q
    ||||| ||||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  27159251 tttcttaatctcaaaatacaacgaatccaatcgttgtactccctccagtcatatccataagcaaaaaatcactttttaggttcattcaacacctaatgta 27159152  T
Q  118 tttggtctataatatatatcaaatacattaggtatatcagtagctaaatttttaaatggtt 178  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27159151 tttgatctataatatatatcaaatacattaggtatatcagtagctacatttttaaatggtt 27159091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 222 - 370
Target Start/End: Complemental strand, 27159014 - 27158866
Alignment:
Q  222 tcaatgcattgtacctggacaagagcaggaggaatagttgcatattctagaatttctgaaannnnnnncacaccaaaattgctgagaccaatagacttag 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||    
T  27159014 tcaatgcattgtacctggacaagagcaggaggaatagttgcatattctagaatttctgaaatttttttcacaccaaaattgctaagaccaatagacttag 27158915  T
Q  322 ccaagcccagattagcacattgttccatatccttccatgtccctttcat 370  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27158914 ccaagcccagattagcacattgttccatatctttccatgtccctttcat 27158866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 9605486 - 9605414
Alignment:
Q  80 aaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9605486 aaaaaaccaatttttaagttcactcaacacctaatgtatttggtctataatatatatcaaatacattaagtat 9605414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 3633736 - 3633661
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattag 148  Q
    ||||| ||||||| |||||||||| |||||| |||||||||| |||||||||||||||||||| ||||||||||||    
T  3633736 tataaacaaaaaatcactttttagattcattaaacacctaatatatttggtctataatatataccaaatacattag 3633661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 9210772 - 9210679
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacatta 147  Q
    |||||| |||||||| || |||||||||||  | || ||||||||||||  || |||||||||||||||||||||||||||| |||||| ||||    
T  9210772 tactccctccagtcacatttataagcaaaaccctacattttaggttcatgtaatacctaatgtatttggtctataatatataccaaataaatta 9210679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 9210623 - 9210720
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    |||| ||||||| || || ||||||||||| || |||||||| ||||||| || || |||| |||||||| |||| |||| | ||||||||||||||||    
T  9210623 tactacttccagacacatttataagcaaaacactactttttaagttcattgaa-acataatttatttggtatatattatagaccaaatacattaggtat 9210720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 16433989 - 16433952
Alignment:
Q  110 ctaatgtatttggtctataatatatatcaaatacatta 147  Q
    |||||||||||| |||||||||||||||||||||||||    
T  16433989 ctaatgtatttgatctataatatatatcaaatacatta 16433952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 20703435 - 20703492
Alignment:
Q  90 tttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacatta 147  Q
    |||||||||||||| || |  ||||||||||||||||||||||| | |||||||||||    
T  20703435 tttttaggttcattgaatatttaatgtatttggtctataatatagaccaaatacatta 20703492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 32650091 - 32650182
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacat 145  Q
    |||||| |||| |||||| ||||||||||| |  | ||||||| || ||| || ||||||| ||||| ||||||| |||||| |||||||||    
T  32650091 tactccctccaatcatatttataagcaaaacataattttttagatttattgaatacctaatatatttagtctatattatataccaaatacat 32650182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 7055554 - 7055651
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    |||||| |||||||| ||  ||||| ||||||  | ||||||| ||||||||| || |||||||||||||| || ||||| |||||||| |||| ||||    
T  7055554 tactccctccagtcacattgataagtaaaaaaatattttttagattcattcaatacttaatgtatttggtcaat-atatagatcaaatatattatgtat 7055651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 9605381 - 9605458
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggt 150  Q
    |||||||||||||| ||||||||  || ||| || || ||||||||||| | |||| |||| | ||||||||||||||    
T  9605381 tataagcaaaaaacaactttttaatttaattgaatacttaatgtatttgatatatattatagaccaaatacattaggt 9605458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 179
Target Start/End: Complemental strand, 27159091 - 27159062
Alignment:
Q  150 tatatcagtagctaaatttttaaatggttt 179  Q
    ||||||||||||||||||||||||||||||    
T  27159091 tatatcagtagctaaatttttaaatggttt 27159062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 674176 - 674120
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataa 129  Q
    |||||||||||||| | ||||||| |||||| || | ||||| ||||||||||||||    
T  674176 tataagcaaaaaacaattttttagattcattgaataactaatatatttggtctataa 674120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 2271251 - 2271203
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttg 121  Q
    |||||||||||||  ||||||||| |||||| |||| ||||||||||||    
T  2271251 tataagcaaaaaataactttttagattcattgaacaactaatgtatttg 2271203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 29278517 - 29278561
Alignment:
Q  93 ttaggttcattcaacacctaatgtatttggtctata-atatatat 136  Q
    |||||||||||||| |||||||||||| |||||||| ||||||||    
T  29278517 ttaggttcattcaatacctaatgtattcggtctatatatatatat 29278561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 40773118 - 40773029
Alignment:
Q  52 tgtactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaata 142  Q
    ||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40773118 tgtactcct-ccggtcacatttataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatataccaaata 40773029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 39231927 - 39231840
Alignment:
Q  65 gtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    ||||||| ||||| |||||||| | |||||||||||||| || | | |||||||||||| ||||||||||| ||||||||||| ||||    
T  39231927 gtcatatttataaacaaaaaactattttttaggttcatttaatatcaaatgtatttggtttataatatataccaaatacattacgtat 39231840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 5354894 - 5354803
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacat 145  Q
    |||||| |||||||| || || |||||||| || ||||||||||| |||| || || | |||||||| ||||||| |||||| |||||||||    
T  5354894 tactccctccagtcacatttaaaagcaaaacactactttttaggtccattgaatactttatgtatttagtctatattatataccaaatacat 5354803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 12645493 - 12645419
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctata 128  Q
    |||||| ||| |||| || |||||||||||||  |||||||| ||||||| || || ||||||||||||||||||    
T  12645493 tactccatccggtcacatatataagcaaaaaaatactttttaagttcattgaatacataatgtatttggtctata 12645419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 5354763 - 5354823
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatata 133  Q
    |||||||||||||| |||||||||||||| | || |||  ||||||||||| |||||||||    
T  5354763 tataagcaaaaaactactttttaggttcaatgaataccacatgtatttggtatataatata 5354823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 17768133 - 17768062
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacatta 147  Q
    |||||||||||||  | |||||||||||||| || || |||||||||||||||   ||||||| |||||||||||    
T  17768133 tataagcaaaaaattattttttaggttcattgaatacataatgtatttggtct---atatataccaaatacatta 17768062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 19087903 - 19087848
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctata 128  Q
    ||||||||||||   |||||||||||||||| || || ||||||||||||||||||    
T  19087903 tataagcaaaaatgtactttttaggttcattgaatacataatgtatttggtctata 19087848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 8850259 - 8850356
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    |||||| ||| |||| || ||||||||||||| || ||||| | ||||||||| |  |||||||||||||| || ||||| | ||||||||||| ||||    
T  8850259 tactccctccggtcacatttataagcaaaaaatcatttttttgattcattcaatatttaatgtatttggtcaat-atatagaccaaatacattatgtat 8850356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 28351078 - 28351016
Alignment:
Q  65 gtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctat 127  Q
    ||||||| |||||||||||||| ||||||||| |||||| || | |||||||||  |||||||    
T  28351078 gtcatatttataagcaaaaaacaactttttagattcattgaataactaatgtatccggtctat 28351016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 40772964 - 40773063
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatg---tatttggtctataatatatatcaaatacattaggt 150  Q
    |||||| ||| |||| || |||||| ||||||| | |||||||||||||| || || |||||   |||||||| |||| |||| | ||||||||||||||    
T  40772964 tactccctccggtcacatttataagtaaaaaacaattttttaggttcatttaatacttaatgtattatttggtatatattatagaccaaatacattaggt 40773063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 8850374 - 8850334
Alignment:
Q  88 actttttaggttcattcaacacctaatgtatttggtctata 128  Q
    |||||||||||||||| || || ||||||||||||||||||    
T  8850374 actttttaggttcattgaatacataatgtatttggtctata 8850334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 13391657 - 13391585
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacat 145  Q
    |||||||||||| | ||||||||||||||||||| |  | |||||||| ||||||| |||  | |||||||||    
T  13391657 tataagcaaaaatcaactttttaggttcattcaataaattatgtatttagtctatattattgaccaaatacat 13391585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 4578209 - 4578281
Alignment:
Q  80 aaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4578209 aaaaaaccattttttaggttcattcaacacctaatgtatttggtctataatatatatgaaatacattaggtat 4578281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 4578334 - 4578237
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaac-cactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggt 150  Q
    |||||| ||| |||| || |||||||||||||  ||||||||||||||||| || |||||||||||||  | |||| |||| | ||||||||||||||    
T  4578334 tactccctcccgtcacatttataagcaaaaaaatcactttttaggttcattgaatacctaatgtatttcatatatattatagaccaaatacattaggt 4578237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 34286328 - 34286273
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctata 128  Q
    ||||||||||||||||||||| |||||||||||| | || |||||| |||||||||    
T  34286328 tataagcaaaaaaccacttttaaggttcattcaataacttatgtatctggtctata 34286273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 30857375 - 30857281
Alignment:
Q  53 gtactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacatta 147  Q
    ||||||| ||| |||| || |||||||||||||  ||||||||| || ||| ||  |||||| |||||| | ||||||||||| |||||||||||    
T  30857375 gtactccctcctgtcacatttataagcaaaaaattactttttagatttattgaatgcctaatatatttgatgtataatatataccaaatacatta 30857281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 128
Target Start/End: Original strand, 12381111 - 12381149
Alignment:
Q  90 tttttaggttcattcaacacctaatgtatttggtctata 128  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  12381111 tttttaggttcattcaatatctaatgtatttggtctata 12381149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 11334332 - 11334296
Alignment:
Q  111 taatgtatttggtctataatatatatcaaatacatta 147  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  11334332 taatgcatttggtctataatatatatcaaatatatta 11334296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 17871777 - 17871837
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatata 133  Q
    |||||||||||| | ||||||||||||||||||  |  | |||||||||||| ||||||||    
T  17871777 tataagcaaaaatcaactttttaggttcattcattaaatgatgtatttggtcaataatata 17871837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 30857243 - 30857319
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattagg 149  Q
    |||| |||||| || ||||||||| |||||| || |  ||||||||||||| |||| |||| |||||||| ||||||    
T  30857243 tatatgcaaaatactactttttagattcattgaatatttaatgtatttggtatatattatacatcaaatatattagg 30857319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 21945184 - 21945105
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    ||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21945184 tataaacaaaaaactattttttaggttcattcaacacctaatgtatttggtctataatatataccaaatacattaggtat 21945105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 4604852 - 4604931
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    ||||||||||||| || ||||||||||||||||||   ||||||||||||| ||||||||||| ||||||||||||||||    
T  4604852 tataagcaaaaaatcaatttttaggttcattcaactattaatgtatttggtttataatatataccaaatacattaggtat 4604931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 42074279 - 42074180
Alignment:
Q  53 gtactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    ||||||||||| |||| || |||||||||||||| | |||||||||||||| ||  |||||| |||||||||||| ||||||| ||||||||||| ||||    
T  42074279 gtactccttccggtcacatttataagcaaaaaactattttttaggttcattgaatgcctaatatatttggtctattatatataccaaatacattaagtat 42074180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 50692107 - 50692179
Alignment:
Q  80 aaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    ||||||| |||||||||||||||| || |||||||||||||||| |||| |||| ||||||||||||| ||||    
T  50692107 aaaaaactactttttaggttcattaaatacctaatgtatttggtatatattatagatcaaatacattacgtat 50692179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 4604964 - 4604890
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacatta 147  Q
    ||||||||||||| ||||||||||||| ||| || |||||||||||||||| |||| |||| | |||||||||||    
T  4604964 tataagcaaaaaatcactttttaggtttattgaatacctaatgtatttggtatatattataaaccaaatacatta 4604890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 21945072 - 21945149
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggt 150  Q
    |||||| |||||| |||||||||| |||||| || |||||||||||||||| |||| |||| | ||||||||||||||    
T  21945072 tataagtaaaaaatcactttttagattcattgaatacctaatgtatttggtatatattatagaccaaatacattaggt 21945149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 12321479 - 12321538
Alignment:
Q  88 actttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacatta 147  Q
    |||||||||||| ||| || | |||||||||||||||||||||||||||||| |||||||    
T  12321479 actttttaggtttattaaaaatctaatgtatttggtctataatatatatcaactacatta 12321538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 457717 - 457643
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctata 128  Q
    |||||| ||| |||| || ||||||||||||  ||||||||||||||||| || || ||||||||||||||||||    
T  457717 tactccctccggtcacatttataagcaaaaatgcactttttaggttcattgaatacataatgtatttggtctata 457643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 30412592 - 30412666
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctata 128  Q
    |||||| ||| |||| || ||||||||||||  ||||||||||||||||| || || ||||||||||||||||||    
T  30412592 tactccctccggtcacatttataagcaaaaatgcactttttaggttcattgaatacataatgtatttggtctata 30412666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 47911994 - 47911897
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    |||||| ||| ||||||| ||||||||||||| |||||||| | ||||||||| |  |||||||||||||| || ||||| | ||||||||||| ||||    
T  47911994 tactccctccggtcatatttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaat-atatagaccaaatacattatgtat 47911897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 25554669 - 25554597
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacat 145  Q
    |||||||||||||| |||||||||| ||||| || | || |||||||||| ||||| ||||||||| ||||||    
T  25554669 tataagcaaaaaacaactttttaggctcattaaataactgatgtatttggcctatagtatatatcacatacat 25554597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 47911843 - 47911919
Alignment:
Q  52 tgtactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctata 128  Q
    |||||||| ||| |||| || ||||| ||||||  ||||||||||||||||| || || ||||||||||||||||||    
T  47911843 tgtactccctccggtcacatttataaacaaaaatgcactttttaggttcattgaatacataatgtatttggtctata 47911919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 50692205 - 50692133
Alignment:
Q  80 aaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    ||||||| ||||||||| ||| |  || || ||||||||||| ||||||||||||| ||||||||||||||||    
T  50692205 aaaaaactactttttagattcttagaatacgtaatgtatttgatctataatatataccaaatacattaggtat 50692133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 457568 - 457665
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    |||||| ||| |||| || ||||||||||||| |||||||| | ||||||||| |  |||||||||||||| || ||||| | ||||||||||| ||||    
T  457568 tactccctccggtcacatttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaat-atatagaccaaatacattatgtat 457665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 14231193 - 14231115
Alignment:
Q  52 tgtactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataat 130  Q
    |||||||| ||| ||||||| |||||| |||| || || ||||||||||||| || | ||||||||| |||||||||||    
T  14231193 tgtactccctcccgtcatatttataaggaaaacacaacattttaggttcattgaataactaatgtatctggtctataat 14231115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 38173563 - 38173470
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcatt-caacacctaatgtatttggtctataatatatatcaaatacatt 146  Q
    |||||| |||||||| || |||||||||||||  | ||||||||||||||  || || ||||||||||||| ||||||||| |  |||||||||    
T  38173563 tactccatccagtcacatttataagcaaaaaagtattttttaggttcattgaaatacttaatgtatttggtttataatatagactaaatacatt 38173470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 4540746 - 4540695
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtc 124  Q
    ||||||||||||| || ||||||| ||||||||| || ||||||||||||||    
T  4540746 tataagcaaaaaagcattttttagattcattcaatacttaatgtatttggtc 4540695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 145
Target Start/End: Original strand, 27559979 - 27560014
Alignment:
Q  110 ctaatgtatttggtctataatatatatcaaatacat 145  Q
    |||||||||||||| |||||||||||||||||||||    
T  27559979 ctaatgtatttggtttataatatatatcaaatacat 27560014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 30412722 - 30412644
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    ||||||||||||| |||||||| | ||||||||| |  |||||||||||||| || ||||| | ||||||||||| ||||    
T  30412722 tataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaat-atatagaccaaatacattatgtat 30412644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 31032587 - 31032512
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataa 129  Q
    |||||| ||| |||| || |||||||||||  | | |||||||||||||| || | ||||||||||||||||||||    
T  31032587 tactccatccggtcacatttataagcaaaactcaattttttaggttcattaaataactaatgtatttggtctataa 31032512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 46673860 - 46673927
Alignment:
Q  80 aaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacatta 147  Q
    ||||||| ||||||||| |||||| || | ||||| ||||||||||| | |||| |||||||||||||    
T  46673860 aaaaaactactttttagattcattgaatatctaatatatttggtctagattatagatcaaatacatta 46673927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 50267126 - 50267056
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatac 143  Q
    ||||||||||| || ||||||| |||||||| || || | |||||||||||||||| |||||  |||||||    
T  50267126 tataagcaaaacactactttttgggttcattgaatactttatgtatttggtctatattatatgccaaatac 50267056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 1599120 - 1599083
Alignment:
Q  110 ctaatgtatttggtctataatatatatcaaatacatta 147  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  1599120 ctaatgtatttagtctataatatatatcagatacatta 1599083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 24419678 - 24419629
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcatt 103  Q
    |||||||||| |||| || |||||||||||||| ||||||||||| ||||    
T  24419678 tactccttccggtcacatttataagcaaaaaacaactttttaggtacatt 24419629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 48636747 - 48636804
Alignment:
Q  88 actttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacat 145  Q
    |||||||||||||||||||    | |||||| |||||||||||||| |||||||||||    
T  48636747 actttttaggttcattcaatcaatgatgtatgtggtctataatataaatcaaatacat 48636804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 9502886 - 9502956
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatac 143  Q
    |||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9502886 tataagtaaaaaatcactttttagattcattcaacacctaatgtatttggtctataatatatatcaaatac 9502956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 38207557 - 38207477
Alignment:
Q  66 tcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacatta 147  Q
    |||||| | ||||||||| |  ||||||||| |||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  38207557 tcatatttgtaagcaaaatagtactttttagattcattcaacccctaatgtatttggtcta-catatatatcaaatacatta 38207477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 27786582 - 27786510
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacat 145  Q
    ||||||||||| || |||||||||||||||| || ||||||| ||||||||||||| |||| | |||||||||    
T  27786582 tataagcaaaacacaactttttaggttcattgaatacctaatatatttggtctatattatacaccaaatacat 27786510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 27786470 - 27786549
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    |||||||||||||| ||||||||||||||   || |||  ||||||||||| ||||||||| | |||||| |||||||||    
T  27786470 tataagcaaaaaactactttttaggttcacggaataccctatgtatttggtgtataatatagaccaaatatattaggtat 27786549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 26331361 - 26331288
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctata 128  Q
    |||||| ||| |||| || |||||||||||||| |||||||||||||||| ||   ||||||| |||||||||||    
T  26331361 tactccctccggtcacatttataagcaaaaaacaactttttaggttcattgaaagactaatgt-tttggtctata 26331288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 55121319 - 55121249
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtc 124  Q
    ||||||||||||||| || |||||||||||||  ||||||||| || ||| || |  ||||||||||||||    
T  55121319 tactccttccagtcacatttataagcaaaaaataactttttagatttattaaataattaatgtatttggtc 55121249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 36444006 - 36443929
Alignment:
Q  65 gtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaata 142  Q
    ||||||| |||||||||||||    |||||||||||||| || |||||| ||||||| | ||||||||| | ||||||    
T  36444006 gtcatatttataagcaaaaaatttatttttaggttcattgaatacctaacgtatttgatttataatatagaccaaata 36443929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 27697377 - 27697317
Alignment:
Q  88 actttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattag 148  Q
    ||||||||||||  || || |||||| |||||| || |||||| |||||||||||||||||    
T  27697377 actttttaggttggttgaatacctaacgtatttagtttataatctatatcaaatacattag 27697317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 55121188 - 55121244
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataa 129  Q
    ||||| |||||||| | |||||||||||||| || | |||||||||||||| |||||    
T  55121188 tataaacaaaaaacaattttttaggttcattgaataactaatgtatttggtttataa 55121244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 23614522 - 23614449
Alignment:
Q  52 tgtactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtct 125  Q
    |||||||||| | || | || ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23614522 tgtactcctttcggttacatttataagcaaaaaaccactttttaggttcattgaacacctaatgtatttggtct 23614449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 32125485 - 32125385
Alignment:
Q  52 tgtactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggta 151  Q
    |||| ||| ||| ||||||| |||||||||||| | |||||||||||||||| || | ||||||||| |||||||||||||||| ||| ||||||| |||    
T  32125485 tgtattccctccggtcatatttataagcaaaaatctactttttaggttcattgaatatctaatgtatgtggtctataatatataccaagtacattaagta 32125386  T
Q  152 t 152  Q
    |    
T  32125385 t 32125385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 47493201 - 47493294
Alignment:
Q  59 cttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    |||||| |||||| |||||| ||||||| ||||||||| || ||| || |||||||||||||||||||||| |||||  ||| |||||||||||    
T  47493201 cttccaatcatatttataagtaaaaaactactttttagatttattgaatacctaatgtatttggtctataacatatactaaacacattaggtat 47493294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 29943657 - 29943731
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattag 148  Q
    |||||||||||||  | |||||||||||||| || | | |||||||||||||||||||||||| ||||||||||||    
T  29943657 tataagcaaaaaatta-tttttaggttcattaaatatcgaatgtatttggtctataatatataccaaatacattag 29943731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 51333549 - 51333504
Alignment:
Q  90 tttttaggttcattcaacacctaatgtatttggtctataatatata 135  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  51333549 tttttaggttcattcaacatctaatatatttggtctataatatata 51333504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 6372060 - 6371996
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtat 118  Q
    |||||||||||||||||| |||||||||||||| | ||||||||| |||| || | |||||||||    
T  6372060 tactccttccagtcatatttataagcaaaaaacaattttttaggtacatttaataactaatgtat 6371996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 52280985 - 52280914
Alignment:
Q  81 aaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    |||||| |||||||||||||||| |  || ||||||||||||||||| ||| ||||||||| ||||| ||||    
T  52280985 aaaaactactttttaggttcattgagtacttaatgtatttggtctatgatacatatcaaattcattaagtat 52280914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 32125333 - 32125427
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattag 148  Q
    |||||||||| ||||||| |||||||||||  | ||||||| |||||||| || || ||||||| ||||| |||| |||| | || |||||||||    
T  32125333 tactccttccggtcatatttataagcaaaacgctacttttttggttcattgaatacttaatgtacttggtatatattatagaccacatacattag 32125427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 23614410 - 23614446
Alignment:
Q  67 catatctataagcaaaaaaccactttttaggttcatt 103  Q
    ||||| |||||||||||||||||||||||||||||||    
T  23614410 catatttataagcaaaaaaccactttttaggttcatt 23614446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 29943778 - 29943695
Alignment:
Q  63 cagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacatt 146  Q
    ||||||||| ||||| |||||||| ||||||||  ||| || || | |||||||||||||| |||| |||| | ||||||||||    
T  29943778 cagtcatatttataaccaaaaaacgactttttaaattcgttgaaaatctaatgtatttggtatatattatagaccaaatacatt 29943695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 2091370 - 2091441
Alignment:
Q  80 aaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    |||||| |||||||||  ||||||||| || |||||||||||||| |||| ||| | ||||||||||| ||||    
T  2091370 aaaaaaacactttttaaattcattcaatacttaatgtatttggtcaataa-atagaccaaatacattatgtat 2091441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 24654147 - 24654239
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacatt 146  Q
    |||||||||| |||| || ||||||||||||| |  |||||||||||| | ||  | ||||||||||||| |||| |||  | ||||||||||    
T  24654147 tactccttccggtcacatttataagcaaaaaaacgatttttaggttcactgaatgcataatgtatttggtatatattattgaccaaatacatt 24654239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 26166008 - 26165968
Alignment:
Q  93 ttaggttcattcaacacctaatgtatttggtctataatata 133  Q
    ||||||||||| || | ||||||||||||||||||||||||    
T  26166008 ttaggttcattgaataactaatgtatttggtctataatata 26165968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 46518546 - 46518474
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacat 145  Q
    ||||||||||||   |||||||||||| |||||| |  | |||||||| ||| |||||||||| |||||||||    
T  46518546 tataagcaaaaattaactttttaggtttattcaataaatgatgtatttagtcaataatatataccaaatacat 46518474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 51313589 - 51313541
Alignment:
Q  76 aagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtc 124  Q
    ||||| |||| |||||||||| ||||||||| || ||||||||||||||    
T  51313589 aagcagaaaaacactttttagattcattcaatacttaatgtatttggtc 51313541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 32082215 - 32082136
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    |||||||||||||  | |||||| ||| |||||||| ||||| |||||||||||||||||||| |||||| |||||||||    
T  32082215 tataagcaaaaaattaatttttaagtttattcaacatctaatatatttggtctataatatataccaaatatattaggtat 32082136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 40532837 - 40532871
Alignment:
Q  111 taatgtatttggtctataatatatatcaaatacat 145  Q
    |||||||||||||||||||||||||||||||||||    
T  40532837 taatgtatttggtctataatatatatcaaatacat 40532871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 23143612 - 23143540
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacat 145  Q
    |||||||||||| | |||||||||||| |||||| |  | |||||||||||| ||||| || |||||||||||    
T  23143612 tataagcaaaaatcaactttttaggtttattcaataaatgatgtatttggtccataatgtagatcaaatacat 23143540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 23555402 - 23555330
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacat 145  Q
    |||||||||||| | |||||||||||| |||||| |  | |||||||||||| ||||| || |||||||||||    
T  23555402 tataagcaaaaatcaactttttaggtttattcaataaatgatgtatttggtccataatgtagatcaaatacat 23555330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 30429064 - 30429116
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaa 106  Q
    |||||| ||| |||| || |||||||||||||| |||||||||||||||||||    
T  30429064 tactccctccggtcacatttataagcaaaaaacaactttttaggttcattcaa 30429116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 33853976 - 33853877
Alignment:
Q  52 tgtactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggta 151  Q
    |||||||| |||  ||| || ||||||||||||| ||||||| || ||||||||| || |||| ||||||||| || ||||| | ||||||||||| |||    
T  33853976 tgtactccctccgatcacatttataagcaaaaaagcacttttcagattcattcaatacttaatttatttggtcaat-atataaaccaaatacattatgta 33853878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 19268074 - 19268148
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacatta 147  Q
    |||||||||||| | |||||||| |||||||||| |  | |||||||| ||| |||||||| || ||||||||||    
T  19268074 tataagcaaaaatcaactttttaagttcattcaataaatgatgtatttagtcaataatatagatgaaatacatta 19268148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 11385809 - 11385845
Alignment:
Q  116 tatttggtctataatatatatcaaatacattaggtat 152  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11385809 tatttggtctataatatatatcaaatgcattaagtat 11385845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 24407176 - 24407258
Alignment:
Q  68 atatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggt 150  Q
    |||| ||||| |||||| |||||||||| | ||||||||||| |||||||| | |||||||||| |||| |||||||||||||    
T  24407176 atatttataaacaaaaatccactttttatgatcattcaacacataatgtatattgtctataatacatattaaatacattaggt 24407258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 29229668 - 29229742
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctata 128  Q
    |||||| ||| |||| || |||||||||||||| ||||||||| |||||| |||| |||||| ||||||||||||    
T  29229668 tactccatccggtcacatatataagcaaaaaacaactttttagattcattaaacaactaatgcatttggtctata 29229742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 35274557 - 35274483
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctata 128  Q
    |||||| ||| |||| || ||||||||||||  ||||||||||||||||| || || ||||||||||||||||||    
T  35274557 tactccctccggtcacatttataagcaaaaatgcactttttaggttcattgaatacataatgtatttggtctata 35274483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 28038625 - 28038553
Alignment:
Q  73 tataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacatt 146  Q
    ||||||||||||| |||||||||| ||||||||| || |||||||||||||| || ||||| | ||||||||||    
T  28038625 tataagcaaaaaaacactttttagattcattcaatacttaatgtatttggtcaat-atatagaccaaatacatt 28038553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 35274408 - 35274505
Alignment:
Q  54 tactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacattaggtat 152  Q
    |||||| ||| |||| || ||||||||||||| |||||||| | ||||||||| |  |||||||||||||| || ||||| | ||||||||||| ||||    
T  35274408 tactccctccggtcacatttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaat-atatagaccaaatacattatgtat 35274505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 29168380 - 29168449
Alignment:
Q  76 aagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataatatatatcaaatacat 145  Q
    ||||||||| | |||||||||||||||| |  |  |||||||||||||| |||||||  |||||||||||    
T  29168380 aagcaaaaatcaactttttaggttcatttattaaataatgtatttggtcaataatatggatcaaatacat 29168449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 29229817 - 29229753
Alignment:
Q  53 gtactccttccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtat 118  Q
    ||||||| ||| ||||||| |||||||||||| | |||||||||||||||| || | |||||||||    
T  29229817 gtactccctccggtcatatttataagcaaaaa-caactttttaggttcattgaataactaatgtat 29229753  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 3485960 - 3485892
Alignment:
Q  61 tccagtcatatctataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctataa 129  Q
    |||||||| || ||||||||||| || | ||||||| |||||| || | ||||||||||| ||||||||    
T  3485960 tccagtcacatttataagcaaaacacaattttttagattcattgaatatctaatgtattttgtctataa 3485892  T

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