View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_53 (Length: 375)
Name: NF14307_low_53
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 353
Target Start/End: Original strand, 54785295 - 54785635
Alignment:
| Q |
12 |
ataggtaaggttcagggttaaaacctcggtcaccatcaaatnnnnnnnntgaggagtttgagtgtaaaatggacaatgttacactgctgatgatgaaagg |
111 |
Q |
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| T |
54785295 |
ataggcaagattcggggttaaaac-tcggtcaccatcaaataaaaaaaatgaggagtttgagtgtaaaatggacaatgttacactgctgatgatgaaagg |
54785393 |
T |
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| Q |
112 |
gtaaaagaggagcagaggtatcgtgtctaacttgttttttaattggttgtaggggtgtatggtaaaatcttccaatcctcgaagtcaacatgggccttag |
211 |
Q |
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| T |
54785394 |
gtaaaagaggagcagaggtatcgtgtctaacttgttttttaattggttgtaggggtgtatggtaaaatcttccaatcctcaaagtcaacatgggccttag |
54785493 |
T |
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| Q |
212 |
gtacaacaccactaaccatgggcctagtgccagaattggaaattgctcttttggcatccatgaaagttgaatcgtagttaacaattgctcataacacatt |
311 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54785494 |
gtacaacaccgctaaccatgggcctagtgccagaattggaaattgctctttaggcatccatgaaagttgaatcgtagttaacaactgctcataacacatt |
54785593 |
T |
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| Q |
312 |
ttaaattgggtgatccaatttaaaatgtagctcaactattct |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
54785594 |
ttaaattgggtgatccaatttaaaatgtagctcaactattct |
54785635 |
T |
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