View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_57 (Length: 367)
Name: NF14307_low_57
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 114 - 352
Target Start/End: Original strand, 14788199 - 14788437
Alignment:
| Q |
114 |
cagcaagatctaaatttagtttcaaacatagttttacaaattcatccaattacgaaattcaacacgaaaatgataataattaacgagccaggaaagagga |
213 |
Q |
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| T |
14788199 |
cagcaagatctaaatttagtttcaaacatagttttacaaattcatccaattacgaaattcaacacgaaaatgataataattaacgagcaaggaaagagga |
14788298 |
T |
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| Q |
214 |
ttactggaaattcgaagagaaggactggaagatgaagagcgagtgagaataactgagagtctgcaaatctgctccgataatcggcatcgctgatatgctg |
313 |
Q |
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| T |
14788299 |
ttactggaaattcgaagagaaggactggaagatgaagagcgagtgagaataactgagagtctgcaaatctgctccgataatcggcatcgctgatatgctg |
14788398 |
T |
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| Q |
314 |
aagaaattaactgcaattgcaaattgaaatcacaaatgt |
352 |
Q |
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| T |
14788399 |
aagaaattaactgcaattgcaaattgaaatcacaaatgt |
14788437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 14788087 - 14788168
Alignment:
| Q |
1 |
aaaatactccactaacattactcatagaaattatttccttaaaaattgaaattattgcattacatagctataaatagtttct |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788087 |
aaaatactccactaacattactcatagaaattatttccctaaaaattgaaattattgcattacatagctataaatagtttct |
14788168 |
T |
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